Variant report

Variant	rs13384856
Chromosome Location	chr2:152565477-152565478
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HMGN3	chr2:152565474-152565497	K562	blood:	n/a	n/a
2	MYC	chr2:152565347-152565632	K562	blood:	n/a	n/a
3	MAX	chr2:152565312-152565540	K562	blood:	n/a	n/a
4	RCOR1	chr2:152565388-152565483	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:152563836..152565601-chr2:152630541..152632941,2	K562	blood:

Variant related genes	Relation type
NEB	TF binding region

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10169098	0.90[CEU][hapmap];0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs10172958	1.00[CEU][hapmap];0.82[JPT][hapmap];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10173335	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10173570	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10174624	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10179630	0.88[ASN][1000 genomes]
rs10186879	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10190733	0.88[ASN][1000 genomes]
rs10192459	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10198509	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10202662	1.00[CEU][hapmap];0.94[YRI][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10204195	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10210114	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10497093	0.92[CEU][hapmap];0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs11692567	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11885813	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12328396	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12693088	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.88[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs12992632	1.00[CEU][hapmap];0.82[JPT][hapmap];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12994595	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs13025954	1.00[CEU][hapmap];0.88[YRI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13386934	0.88[ASN][1000 genomes]
rs13395294	0.88[ASN][1000 genomes]
rs13396041	0.88[ASN][1000 genomes]
rs13396377	0.88[EUR][1000 genomes]
rs13402710	0.89[CEU][hapmap];0.88[ASN][1000 genomes]
rs13408513	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13414130	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs13416266	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs13421183	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13427102	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13428623	0.88[ASN][1000 genomes]
rs13429567	0.88[ASN][1000 genomes]
rs16830358	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs16830400	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2030589	0.90[CEU][hapmap];0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs2030590	0.80[CEU][hapmap];0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs34629725	0.88[ASN][1000 genomes]
rs36111287	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs36141926	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3768656	0.92[CEU][hapmap];0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs4436952	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4503987	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4525690	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62174407	0.85[ASN][1000 genomes]
rs62174408	0.85[ASN][1000 genomes]
rs62174411	0.88[ASN][1000 genomes]
rs6433628	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6729878	0.92[CEU][hapmap];0.82[JPT][hapmap];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6750638	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6754783	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7560854	1.00[CEU][hapmap];0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs7565109	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7591340	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7591363	1.00[CEU][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934136	chr2:152308156-152664443	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1005746	chr2:152361972-153059840	Strong transcription Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv535984	chr2:152361972-153059840	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv469804	chr2:152404429-152570882	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv482520	chr2:152404429-152570882	Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv933357	chr2:152526786-152591138	Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:152541400-152566800	Weak transcription	Psoas Muscle	Psoas
2	chr2:152561400-152574800	Strong transcription	Fetal Muscle Leg	muscle
3	chr2:152562200-152582000	Strong transcription	Fetal Muscle Trunk	muscle
4	chr2:152562600-152567800	Strong transcription	HSMMtube	muscle
5	chr2:152564000-152572400	Genic enhancers	Skeletal Muscle Male	skeletal muscle
6	chr2:152564600-152566600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr2:152564600-152584000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr2:152565200-152565800	Transcr. at gene 5' and 3'	Skeletal Muscle Female	skeletal muscle
9	chr2:152565400-152565600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr2:152565400-152565600	ZNF genes & repeats	Aorta	Aorta

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