Variant report

Variant	rs10174270
Chromosome Location	chr2:20598516-20598517
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10186458	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13393661	0.92[ASN][1000 genomes]
rs13393775	0.92[ASN][1000 genomes]
rs6531238	0.91[ASN][1000 genomes]
rs6710171	0.81[AMR][1000 genomes]
rs6710671	0.92[ASN][1000 genomes]
rs7572892	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873716	chr2:20572094-20621404	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv581165	chr2:20581058-20616990	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20581600-20601000	Weak transcription	Right Atrium	heart
2	chr2:20592600-20600200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr2:20596200-20601000	Weak transcription	Rectal Smooth Muscle	rectum
4	chr2:20596400-20598600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr2:20596600-20598800	Weak transcription	Stomach Smooth Muscle	stomach
6	chr2:20597600-20599400	Enhancers	HSMMtube	muscle
7	chr2:20597600-20599600	Enhancers	Fetal Muscle Trunk	muscle
8	chr2:20597600-20601400	Enhancers	Fetal Muscle Leg	muscle
9	chr2:20597800-20599600	Enhancers	Placenta	Placenta
10	chr2:20598000-20599000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr2:20598000-20599600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr2:20598000-20599600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr2:20598000-20601800	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr2:20598200-20599400	Enhancers	HSMM	muscle
15	chr2:20598400-20599000	Enhancers	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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