Variant report

Variant	rs13393775
Chromosome Location	chr2:20611111-20611112
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:20541478..20544272-chr2:20609802..20611413,2	K562	blood:
2	chr2:20610936..20611802-chr2:20834956..20835489,2	MCF-7	breast:
3	chr2:20610895..20611791-chr2:20841871..20842811,4	K562	blood:
4	chr2:20610929..20611800-chr2:20841880..20842825,3	MCF-7	breast:
5	chr2:20610139..20612822-chr2:20645076..20648295,4	MCF-7	breast:
6	chr2:20607895..20612833-chr2:20645228..20650823,10	MCF-7	breast:
7	chr2:20611093..20611684-chr2:20647842..20648645,2	MCF-7	breast:
8	chr2:20610878..20611488-chr2:20835352..20836256,4	K562	blood:
9	chr2:20610949..20611510-chr2:20622381..20623012,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10174270	0.92[ASN][1000 genomes]
rs10186458	0.92[ASN][1000 genomes]
rs13393661	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6531238	0.96[ASN][1000 genomes]
rs6710671	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7572892	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873716	chr2:20572094-20621404	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv581165	chr2:20581058-20616990	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20601400-20614800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:20610200-20611200	Enhancers	Fetal Muscle Leg	muscle
3	chr2:20610200-20611600	Enhancers	Right Ventricle	heart
4	chr2:20610400-20611200	Enhancers	Fetal Muscle Trunk	muscle
5	chr2:20610400-20611200	Enhancers	HSMM	muscle
6	chr2:20610400-20611400	Enhancers	HSMMtube	muscle
7	chr2:20610400-20621000	Weak transcription	Left Ventricle	heart
8	chr2:20610600-20611600	Enhancers	Muscle Satellite Cultured Cells	--
9	chr2:20610800-20611600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr2:20610800-20611600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr2:20611000-20611400	Active TSS	Stomach Smooth Muscle	stomach
12	chr2:20611000-20611600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr2:20611000-20611600	Enhancers	Placenta	Placenta
14	chr2:20611000-20611800	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr2:20611000-20612000	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr2:20611000-20613000	Enhancers	HepG2	liver
17	chr2:20611000-20614600	Weak transcription	Esophagus	oesophagus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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