Variant report

Variant	rs10174921
Chromosome Location	chr2:190357217-190357218
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10179972	1.00[YRI][hapmap]
rs10200629	1.00[YRI][hapmap]
rs10202436	1.00[YRI][hapmap]
rs10202723	1.00[YRI][hapmap]
rs10205215	1.00[YRI][hapmap]
rs12165153	0.83[AFR][1000 genomes]
rs13386772	0.82[AFR][1000 genomes]
rs13405921	1.00[AMR][1000 genomes]
rs13407452	1.00[YRI][hapmap]
rs13409317	0.97[AFR][1000 genomes]
rs13424504	1.00[YRI][hapmap]
rs13429203	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs13429628	1.00[YRI][hapmap]
rs13430575	0.97[AFR][1000 genomes]
rs13430587	0.84[AFR][1000 genomes]
rs28463020	1.00[AMR][1000 genomes]
rs6721230	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs6757248	1.00[YRI][hapmap]
rs7558500	1.00[YRI][hapmap]
rs7561643	1.00[YRI][hapmap]
rs7584984	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533029	chr2:189812229-190554339	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv875615	chr2:190215527-190444392	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv584062	chr2:190272195-190376493	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:190335000-190366200	Weak transcription	Ovary	ovary
2	chr2:190349200-190365000	Weak transcription	Fetal Intestine Large	intestine
3	chr2:190353000-190364600	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr2:190357000-190357400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr2:190357000-190357400	Enhancers	NHDF-Ad	bronchial
6	chr2:190357000-190357600	Enhancers	NH-A	brain
7	chr2:190357000-190357800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr2:190357000-190358000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr2:190357200-190357400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr2:190357200-190358000	Enhancers	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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