Variant report

Variant	rs7558500
Chromosome Location	chr2:190212228-190212229
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:190175787..190176761-chr2:190211954..190212798,2	MCF-7	breast:
2	chr2:189979663..189980532-chr2:190211912..190212790,3	MCF-7	breast:
3	chr2:189847939..189848875-chr2:190211912..190212800,2	MCF-7	breast:
4	chr2:190210465..190212459-chr2:190217918..190220688,2	K562	blood:
5	chr2:189958769..189959700-chr2:190211813..190212823,3	K562	blood:

Variant related genes	Relation type
ENSG00000213601	Chromatin interaction
ENSG00000266817	Chromatin interaction

Extended variants
information (count: 236 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:233)

rs_ID	r²[population]
rs10153543	1.00[ASN][1000 genomes]
rs10153951	1.00[ASN][1000 genomes]
rs10166669	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10166763	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10168736	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10169952	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10170085	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10171824	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10172337	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10174122	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10174725	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10174921	1.00[YRI][hapmap]
rs10174952	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10177339	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10177917	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10178328	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10178743	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10178969	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10179002	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10179972	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10181606	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10181872	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10182328	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10182531	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10182637	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10184389	1.00[ASN][1000 genomes]
rs10185003	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10185694	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10186436	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10187336	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10187589	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10187808	1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10187975	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10188565	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10189469	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10190096	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10191409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10191847	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10193669	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10193984	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10194053	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10194834	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10194934	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10196089	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10196323	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10196675	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10196977	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10198744	1.00[ASN][1000 genomes]
rs10200629	1.00[CEU][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10201372	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10201772	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10201984	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10202436	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10202723	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10202780	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10202907	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10203516	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10203719	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10204110	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10204767	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10205090	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10205139	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10205215	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10205775	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10206086	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10206562	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10207004	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10208826	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10208917	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10209758	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10221749	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10221861	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10439311	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10439312	1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10469647	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10931412	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10931413	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12165153	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12328504	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12328515	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12328914	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13383723	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13386772	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13387876	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13387877	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13388039	1.00[ASN][1000 genomes]
rs13388366	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13388779	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13389403	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13391841	1.00[ASN][1000 genomes]
rs13391984	1.00[CEU][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13392896	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13392978	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13394718	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13396640	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13396910	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13396980	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13400624	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13401179	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13402678	1.00[ASN][1000 genomes]
rs13402923	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13405157	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13405433	1.00[ASN][1000 genomes]
rs13406037	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13406041	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13407353	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13407402	1.00[YRI][hapmap]
rs13407452	1.00[CEU][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13407566	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13409317	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13409397	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13413979	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13414763	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13418443	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13419269	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13419984	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13420832	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13423429	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13423654	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13424586	1.00[ASN][1000 genomes]
rs13425539	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13425989	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13426353	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13426851	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13427051	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13427092	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13427686	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13427692	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13428976	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13429203	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13430496	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13430575	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13430587	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13430671	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13430879	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13430915	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13431292	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13432036	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13432963	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28368169	1.00[ASN][1000 genomes]
rs28414300	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28433254	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28509172	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28545536	1.00[ASN][1000 genomes]
rs28567040	1.00[ASN][1000 genomes]
rs28627748	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28679474	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28760459	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55808493	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55819631	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56900526	1.00[ASN][1000 genomes]
rs56996340	1.00[ASN][1000 genomes]
rs57187765	1.00[ASN][1000 genomes]
rs57215654	1.00[ASN][1000 genomes]
rs57398906	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57458325	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57525746	1.00[ASN][1000 genomes]
rs57598703	1.00[ASN][1000 genomes]
rs58396131	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59506401	1.00[ASN][1000 genomes]
rs59826931	1.00[ASN][1000 genomes]
rs59872509	1.00[ASN][1000 genomes]
rs60056080	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60341298	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60708586	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61154892	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61625679	1.00[ASN][1000 genomes]
rs6711766	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6717036	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6724634	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6724646	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6725458	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6725599	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6728197	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6737615	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6740723	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6740742	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6740926	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6740999	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6746050	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6754272	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6755665	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6757134	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7355598	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73978603	0.89[AMR][1000 genomes]
rs73978605	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73978885	1.00[ASN][1000 genomes]
rs73980135	1.00[ASN][1000 genomes]
rs73980165	1.00[ASN][1000 genomes]
rs73980173	1.00[ASN][1000 genomes]
rs73980174	1.00[ASN][1000 genomes]
rs73980175	1.00[ASN][1000 genomes]
rs73980177	1.00[ASN][1000 genomes]
rs73980180	1.00[ASN][1000 genomes]
rs73980182	1.00[ASN][1000 genomes]
rs73980183	1.00[ASN][1000 genomes]
rs73980187	1.00[ASN][1000 genomes]
rs73980188	1.00[ASN][1000 genomes]
rs73980190	1.00[ASN][1000 genomes]
rs73980191	1.00[ASN][1000 genomes]
rs73980192	1.00[ASN][1000 genomes]
rs73980193	1.00[ASN][1000 genomes]
rs73980194	1.00[ASN][1000 genomes]
rs73980195	1.00[ASN][1000 genomes]
rs73980196	1.00[ASN][1000 genomes]
rs73980197	1.00[ASN][1000 genomes]
rs73980198	1.00[ASN][1000 genomes]
rs73980199	1.00[ASN][1000 genomes]
rs73980201	1.00[ASN][1000 genomes]
rs73980202	1.00[ASN][1000 genomes]
rs73982004	1.00[ASN][1000 genomes]
rs73982007	1.00[ASN][1000 genomes]
rs73982032	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73982033	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73982034	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73982037	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7561643	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7562592	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7566271	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7569974	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7571181	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7572416	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7574439	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7584984	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7586032	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7592383	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7597402	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7597614	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7599676	1.00[ASN][1000 genomes]
rs7606348	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7609327	1.00[CEU][hapmap];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9288164	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9808058	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533029	chr2:189812229-190554339	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv875613	chr2:189999011-190324685	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv875614	chr2:190110841-190254758	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:190211400-190212400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr2:190211400-190212400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr2:190211400-190212400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr2:190211400-190212600	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr2:190211400-190212600	Enhancers	Muscle Satellite Cultured Cells	--
6	chr2:190211400-190212800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr2:190211400-190212800	Enhancers	Colon Smooth Muscle	Colon
8	chr2:190211400-190212800	Enhancers	Rectal Smooth Muscle	rectum
9	chr2:190211400-190213000	Enhancers	NHDF-Ad	bronchial
10	chr2:190211400-190213000	Enhancers	Osteobl	bone
11	chr2:190211400-190213400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr2:190211600-190212400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr2:190211600-190212600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr2:190211600-190212800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr2:190211600-190213000	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr2:190211600-190213000	Enhancers	Primary T cells from cord blood	blood
17	chr2:190211600-190213000	Enhancers	A549	lung
18	chr2:190211600-190213000	Enhancers	HSMM	muscle
19	chr2:190211800-190212400	Enhancers	NHLF	lung
20	chr2:190211800-190212800	Enhancers	Fetal Lung	lung
21	chr2:190211800-190212800	Enhancers	K562	blood
22	chr2:190211800-190213000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr2:190211800-190213000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr2:190211800-190213000	Enhancers	HSMMtube	muscle
25	chr2:190211800-190213000	Enhancers	NH-A	brain
26	chr2:190211800-190213800	Enhancers	HMEC	breast
27	chr2:190211800-190215200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr2:190212000-190212800	Enhancers	HUVEC	blood vessel
29	chr2:190212000-190213000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr2:190212000-190215200	Weak transcription	Adipose Nuclei	Adipose
31	chr2:190212000-190215200	Weak transcription	Fetal Stomach	stomach
32	chr2:190212000-190215200	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr2:190212200-190212800	Enhancers	NHEK	skin
34	chr2:190212200-190215200	Weak transcription	Ovary	ovary

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