The 2.0 version of rSNPBase

Variant report

Variant rs73980135
Chromosome Location chr2:189975990-189975991
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:40 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:189922800-189980800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
2 chr2:189933000-189980200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
3 chr2:189947600-189980800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
4 chr2:189948200-189980600 Weak transcription Placenta Placenta
5 chr2:189950800-189977800 Weak transcription Fetal Intestine Large intestine
6 chr2:189954800-189980400 Weak transcription Ovary ovary
7 chr2:189958200-189981000 Weak transcription Fetal Stomach stomach
8 chr2:189962400-189995200 Weak transcription Aorta Aorta
9 chr2:189962600-189978800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
10 chr2:189962600-189980600 Weak transcription Fetal Muscle Leg muscle
11 chr2:189968600-189977800 Weak transcription HSMMtube muscle
12 chr2:189968600-190012000 Weak transcription Fetal Muscle Trunk muscle
13 chr2:189969000-189980000 Weak transcription Stomach Smooth Muscle stomach
14 chr2:189971000-189978200 Strong transcription HSMM muscle
15 chr2:189971400-189976400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
16 chr2:189971600-189977800 Weak transcription Rectal Smooth Muscle rectum
17 chr2:189973000-189980200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
18 chr2:189974400-189976400 Enhancers Liver Liver
19 chr2:189974600-189980200 Weak transcription Fetal Lung lung
20 chr2:189974800-190007600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
21 chr2:189975000-189980200 Weak transcription Adipose Nuclei Adipose
22 chr2:189975200-189977200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
23 chr2:189975200-189978600 Weak transcription NHDF-Ad bronchial
24 chr2:189975200-189978600 Weak transcription NHLF lung
25 chr2:189975200-189980400 Weak transcription Breast Myoepithelial Primary Cells Breast
26 chr2:189975200-189980400 Weak transcription Duodenum Smooth Muscle Duodenum
27 chr2:189975200-189980800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
28 chr2:189975200-189980800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
29 chr2:189975200-189988600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
30 chr2:189975400-189976000 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
31 chr2:189975400-189977800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
32 chr2:189975400-189978000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
33 chr2:189975400-189978600 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
34 chr2:189975400-189988600 Weak transcription HUVEC blood vessel
35 chr2:189975600-189976400 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
36 chr2:189975600-189977200 Weak transcription Muscle Satellite Cultured Cells --
37 chr2:189975600-189977800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
38 chr2:189975600-189977800 Enhancers A549 lung
39 chr2:189975600-189978600 Weak transcription NH-A brain
40 chr2:189975600-189978600 Weak transcription Osteobl bone

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Last update: Aug 31, 2015