The 2.0 version of rSNPBase

Variant report

Variant rs59872509
Chromosome Location chr2:190041227-190041228
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:53 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:190029400-190042200 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr2:190029600-190043400 Weak transcription Skeletal Muscle Male skeletal muscle
3 chr2:190029800-190043200 Weak transcription Psoas Muscle Psoas
4 chr2:190030400-190043400 Weak transcription Skeletal Muscle Female skeletal muscle
5 chr2:190034000-190043400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
6 chr2:190034200-190041400 Weak transcription HUES64 Cell Line embryonic stem cell
7 chr2:190037400-190041400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
8 chr2:190037400-190042600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
9 chr2:190037400-190042600 Weak transcription Placenta Amnion Placenta Amnion
10 chr2:190039800-190044800 Active TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
11 chr2:190040200-190044800 Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
12 chr2:190040400-190041400 Flanking Active TSS Adipose Nuclei Adipose
13 chr2:190040400-190045000 Active TSS Rectal Smooth Muscle rectum
14 chr2:190040400-190045200 Active TSS Foreskin Fibroblast Primary Cells skin02 Skin
15 chr2:190040600-190041400 Flanking Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
16 chr2:190040600-190041400 Flanking Active TSS Fetal Lung lung
17 chr2:190040600-190041400 Transcr. at gene 5' and 3' A549 lung
18 chr2:190040600-190041400 Flanking Active TSS NHDF-Ad bronchial
19 chr2:190040600-190041800 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
20 chr2:190040600-190044800 Active TSS Rectal Mucosa Donor 29 rectum
21 chr2:190040600-190045200 Active TSS Fetal Muscle Leg muscle
22 chr2:190040800-190041400 Flanking Active TSS Foreskin Fibroblast Primary Cells skin01 Skin
23 chr2:190040800-190041400 Flanking Active TSS Fetal Stomach stomach
24 chr2:190040800-190041600 Enhancers Fetal Heart heart
25 chr2:190040800-190041600 Active TSS Right Ventricle heart
26 chr2:190040800-190042200 Transcr. at gene 5' and 3' HSMM muscle
27 chr2:190040800-190042400 Enhancers iPS-20b Cell Line embryonic stem cell
28 chr2:190040800-190044800 Active TSS NH-A brain
29 chr2:190040800-190045000 Active TSS Fetal Muscle Trunk muscle
30 chr2:190040800-190045000 Active TSS Right Atrium heart
31 chr2:190040800-190045200 Active TSS Aorta Aorta
32 chr2:190040800-190045200 Active TSS NHLF lung
33 chr2:190041000-190041400 Flanking Active TSS Colon Smooth Muscle Colon
34 chr2:190041000-190041600 Flanking Active TSS Osteobl bone
35 chr2:190041000-190042400 Enhancers Liver Liver
36 chr2:190041000-190042600 Active TSS H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
37 chr2:190041000-190044800 Active TSS hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
38 chr2:190041000-190044800 Active TSS Duodenum Mucosa Duodenum
39 chr2:190041000-190045000 Active TSS Fetal Kidney kidney
40 chr2:190041000-190045000 Active TSS HSMMtube muscle
41 chr2:190041200-190041400 Flanking Active TSS Foreskin Keratinocyte Primary Cells skin02 Skin
42 chr2:190041200-190041400 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
43 chr2:190041200-190041400 Active TSS Ovary ovary
44 chr2:190041200-190041600 Flanking Active TSS Fetal Intestine Large intestine
45 chr2:190041200-190041600 Flanking Active TSS Stomach Smooth Muscle stomach
46 chr2:190041200-190042000 Active TSS HUVEC blood vessel
47 chr2:190041200-190042600 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
48 chr2:190041200-190044000 Active TSS HUES6 Cell Line embryonic stem cell
49 chr2:190041200-190044200 Active TSS Fetal Intestine Small intestine
50 chr2:190041200-190044800 Active TSS Muscle Satellite Cultured Cells --

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Last update: Aug 31, 2015