Variant report

Variant	rs10469740
Chromosome Location	chr2:190157471-190157472
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10153543	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10153951	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10170085	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10174122	0.92[EUR][1000 genomes]
rs10179972	0.92[EUR][1000 genomes]
rs10182328	0.92[EUR][1000 genomes]
rs10182637	0.92[EUR][1000 genomes]
rs10184389	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10187808	0.92[EUR][1000 genomes]
rs10188565	0.92[EUR][1000 genomes]
rs10189469	0.92[EUR][1000 genomes]
rs10198744	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10204767	0.92[EUR][1000 genomes]
rs10205775	0.92[EUR][1000 genomes]
rs10221749	0.92[EUR][1000 genomes]
rs10221861	0.92[EUR][1000 genomes]
rs10439311	0.92[EUR][1000 genomes]
rs10439312	0.92[EUR][1000 genomes]
rs10469647	0.92[EUR][1000 genomes]
rs10469738	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13388039	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13391841	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13402678	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13409397	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13418443	0.92[EUR][1000 genomes]
rs13423654	0.92[EUR][1000 genomes]
rs13425539	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13425989	0.92[EUR][1000 genomes]
rs28368169	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28414300	0.92[EUR][1000 genomes]
rs28433254	0.92[EUR][1000 genomes]
rs28567040	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28679474	0.92[EUR][1000 genomes]
rs55808493	0.92[EUR][1000 genomes]
rs55819631	0.92[EUR][1000 genomes]
rs56900526	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56996340	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57187765	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57215654	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57398906	0.92[EUR][1000 genomes]
rs57458325	0.92[EUR][1000 genomes]
rs57525746	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57598703	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58396131	0.92[EUR][1000 genomes]
rs59506401	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs59826931	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs59872509	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs60056080	0.92[EUR][1000 genomes]
rs60341298	0.84[EUR][1000 genomes]
rs60708586	0.92[EUR][1000 genomes]
rs61154892	0.92[EUR][1000 genomes]
rs61625679	0.92[EUR][1000 genomes]
rs73978603	0.81[EUR][1000 genomes]
rs73978605	0.92[EUR][1000 genomes]
rs73980165	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73980173	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73980174	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73980175	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73980177	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73980180	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73980182	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73980183	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73980187	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73980188	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73980190	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73980191	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73980192	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73980193	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73980194	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73980195	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73980196	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73980197	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73980198	0.92[EUR][1000 genomes]
rs73980199	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73980201	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73980202	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73982004	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73982007	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73982032	0.92[EUR][1000 genomes]
rs73982033	0.92[EUR][1000 genomes]
rs73982034	0.92[EUR][1000 genomes]
rs73982037	0.92[EUR][1000 genomes]
rs7566271	0.92[EUR][1000 genomes]
rs7569974	0.92[EUR][1000 genomes]
rs7609327	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533029	chr2:189812229-190554339	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv875613	chr2:189999011-190324685	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv875614	chr2:190110841-190254758	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:190150800-190158200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr2:190152400-190162400	Weak transcription	HMEC	breast
3	chr2:190153600-190162800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr2:190153800-190162800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr2:190154000-190158200	Weak transcription	Osteobl	bone
6	chr2:190154800-190160200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr2:190155200-190158200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr2:190157200-190158200	Weak transcription	HSMM	muscle

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