Variant report

Variant	rs10469738
Chromosome Location	chr2:190157142-190157143
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 138 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:135)

rs_ID	r²[population]
rs10153543	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10153951	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10170085	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10174122	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10179972	1.00[CEU][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10181606	1.00[CEU][hapmap]
rs10182328	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10182531	0.84[EUR][1000 genomes]
rs10182637	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10184389	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10187808	1.00[CEU][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10188565	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10189469	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10193669	1.00[CEU][hapmap]
rs10194053	1.00[CEU][hapmap]
rs10194834	0.84[EUR][1000 genomes]
rs10194934	0.84[EUR][1000 genomes]
rs10196323	1.00[CEU][hapmap]
rs10196675	1.00[CEU][hapmap]
rs10198744	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10200629	1.00[CEU][hapmap]
rs10202436	1.00[CEU][hapmap]
rs10202723	1.00[CEU][hapmap]
rs10202907	1.00[CEU][hapmap]
rs10204767	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10205215	1.00[CEU][hapmap]
rs10205775	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10206086	1.00[CEU][hapmap]
rs10207860	1.00[ASN][1000 genomes]
rs10221749	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10221861	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10439311	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10439312	1.00[CEU][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10469647	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10469740	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13388039	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13388366	1.00[CEU][hapmap]
rs13391841	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13391984	1.00[CEU][hapmap]
rs13392978	1.00[CEU][hapmap]
rs13402678	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13407452	1.00[CEU][hapmap]
rs13409397	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13409960	0.90[AMR][1000 genomes]
rs13418443	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13423654	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13425539	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13425989	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13427051	1.00[CEU][hapmap]
rs13427686	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13428976	1.00[CEU][hapmap]
rs13429203	1.00[CEU][hapmap]
rs13430671	1.00[CEU][hapmap]
rs13430879	1.00[CEU][hapmap]
rs13430915	1.00[CEU][hapmap]
rs28368169	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28414300	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28433254	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28567040	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28679474	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55808493	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55819631	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56900526	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56996340	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57187765	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57215654	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57398906	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57458325	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57525746	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57598703	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58396131	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59506401	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59826931	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59872509	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60056080	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60341298	0.92[EUR][1000 genomes]
rs60708586	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61154892	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61625679	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6414123	1.00[ASN][1000 genomes]
rs6717036	0.84[EUR][1000 genomes]
rs6724646	1.00[CEU][hapmap]
rs6725458	1.00[CEU][hapmap]
rs6728197	1.00[CEU][hapmap]
rs6737615	1.00[CEU][hapmap]
rs6740926	1.00[CEU][hapmap]
rs6740999	1.00[CEU][hapmap]
rs6746050	0.84[EUR][1000 genomes]
rs6754272	1.00[CEU][hapmap]
rs6757134	1.00[CEU][hapmap]
rs6761847	1.00[ASN][1000 genomes]
rs73978603	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73978605	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73978837	0.83[ASN][1000 genomes]
rs73980165	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73980173	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73980174	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73980175	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73980177	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73980180	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73980182	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73980183	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73980187	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73980188	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73980190	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73980191	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73980192	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73980193	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73980194	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73980195	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73980196	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73980197	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73980198	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73980199	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73980201	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73980202	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73982004	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73982007	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73982032	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73982033	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73982034	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73982037	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7558500	1.00[CEU][hapmap]
rs7561643	1.00[CEU][hapmap]
rs7566271	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7569974	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7572416	1.00[CEU][hapmap]
rs7582435	1.00[ASN][1000 genomes]
rs7584984	1.00[CEU][hapmap]
rs7586032	1.00[CEU][hapmap]
rs7592383	1.00[CEU][hapmap]
rs7599216	1.00[ASN][1000 genomes]
rs7606348	1.00[CEU][hapmap]
rs7606355	1.00[ASN][1000 genomes]
rs7609327	1.00[CEU][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533029	chr2:189812229-190554339	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv875613	chr2:189999011-190324685	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv875614	chr2:190110841-190254758	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:190150800-190158200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr2:190152400-190162400	Weak transcription	HMEC	breast
3	chr2:190153600-190162800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr2:190153800-190162800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr2:190154000-190158200	Weak transcription	Osteobl	bone
6	chr2:190154800-190160200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr2:190155200-190158200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr2:190157000-190157200	Enhancers	HSMM	muscle

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