Variant report

Variant	rs10204110
Chromosome Location	chr2:190246244-190246245
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 230 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:225)

rs_ID	r²[population]
rs10153543	1.00[ASN][1000 genomes]
rs10153951	1.00[ASN][1000 genomes]
rs10166669	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10166763	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10168736	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10169952	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10170085	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10171824	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10172337	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10174122	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10174725	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10174952	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10177339	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10177917	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10178328	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10178743	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10178969	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10179002	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10179972	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10181606	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10181872	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10182328	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10182531	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10182637	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10184389	1.00[ASN][1000 genomes]
rs10185003	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10185694	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10186436	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10187336	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10187589	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10187808	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10187975	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10188565	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10189469	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10190096	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10191409	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10191847	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10193669	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10193984	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10194053	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10194834	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10194934	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10196089	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10196323	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10196675	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10196977	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10198744	1.00[ASN][1000 genomes]
rs10200629	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10201372	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10201772	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10201984	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10202436	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10202723	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10202780	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10202907	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10203516	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10203719	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10204767	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10205090	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10205139	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10205215	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10205775	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10206086	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10206562	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10207004	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10208826	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10208917	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10209758	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10221749	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10221861	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10439311	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10439312	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10469647	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10931412	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10931413	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12165153	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12328504	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12328515	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12328914	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13383723	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13386772	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13387876	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13387877	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13388039	1.00[ASN][1000 genomes]
rs13388366	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13388779	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13389403	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13391841	1.00[ASN][1000 genomes]
rs13391984	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13392896	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13392978	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13394718	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13396640	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13396910	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13396980	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13400624	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13401179	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13402678	1.00[ASN][1000 genomes]
rs13402923	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13405157	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13405433	1.00[ASN][1000 genomes]
rs13406037	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13406041	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13407353	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13407452	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13407566	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13409317	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13409397	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13413979	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13414763	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13418443	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13419269	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13419984	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13420832	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13423429	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13423654	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13424586	1.00[ASN][1000 genomes]
rs13425539	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13425989	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13426353	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13426851	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13427051	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13427092	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13427686	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13427692	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13428976	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13429203	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13430496	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13430575	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13430587	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13430671	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13430879	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13430915	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13431292	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13432036	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13432963	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28368169	1.00[ASN][1000 genomes]
rs28414300	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28433254	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28509172	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28545536	1.00[ASN][1000 genomes]
rs28567040	1.00[ASN][1000 genomes]
rs28627748	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28679474	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28760459	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55808493	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55819631	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56996340	1.00[ASN][1000 genomes]
rs57215654	1.00[ASN][1000 genomes]
rs57398906	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57458325	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57598703	1.00[ASN][1000 genomes]
rs58396131	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59506401	1.00[ASN][1000 genomes]
rs59826931	1.00[ASN][1000 genomes]
rs59872509	1.00[ASN][1000 genomes]
rs60056080	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60708586	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61154892	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61625679	1.00[ASN][1000 genomes]
rs6711766	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6717036	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6724634	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6724646	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6725458	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6725599	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6728197	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6737615	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6740723	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6740742	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6740926	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6740999	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6746050	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6754272	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6755665	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6757134	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7355598	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73978603	0.89[AMR][1000 genomes]
rs73978605	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73980165	1.00[ASN][1000 genomes]
rs73980173	1.00[ASN][1000 genomes]
rs73980174	1.00[ASN][1000 genomes]
rs73980175	1.00[ASN][1000 genomes]
rs73980177	1.00[ASN][1000 genomes]
rs73980180	1.00[ASN][1000 genomes]
rs73980182	1.00[ASN][1000 genomes]
rs73980183	1.00[ASN][1000 genomes]
rs73980187	1.00[ASN][1000 genomes]
rs73980188	1.00[ASN][1000 genomes]
rs73980190	1.00[ASN][1000 genomes]
rs73980191	1.00[ASN][1000 genomes]
rs73980192	1.00[ASN][1000 genomes]
rs73980193	1.00[ASN][1000 genomes]
rs73980194	1.00[ASN][1000 genomes]
rs73980195	1.00[ASN][1000 genomes]
rs73980196	1.00[ASN][1000 genomes]
rs73980197	1.00[ASN][1000 genomes]
rs73980198	1.00[ASN][1000 genomes]
rs73980199	1.00[ASN][1000 genomes]
rs73980201	1.00[ASN][1000 genomes]
rs73980202	1.00[ASN][1000 genomes]
rs73982004	1.00[ASN][1000 genomes]
rs73982007	1.00[ASN][1000 genomes]
rs73982032	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73982033	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73982034	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73982037	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7558500	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7561643	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7562592	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7566271	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7569974	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7571181	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7572416	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7574439	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7584984	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7586032	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7592383	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7597402	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7597614	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7599676	1.00[ASN][1000 genomes]
rs7606348	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7609327	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9288164	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9808058	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533029	chr2:189812229-190554339	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv875613	chr2:189999011-190324685	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv875614	chr2:190110841-190254758	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv875615	chr2:190215527-190444392	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	esv3451292	chr2:190225623-190266276	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:190243600-190246400	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr2:190245000-190257200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr2:190245600-190257200	Weak transcription	Osteobl	bone
4	chr2:190246200-190247400	Weak transcription	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links