Variant report

Variant	rs10174725
Chromosome Location	chr2:190222739-190222740
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 232 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:228)

rs_ID	r²[population]
rs10153543	1.00[ASN][1000 genomes]
rs10153951	1.00[ASN][1000 genomes]
rs10166669	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10166763	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10168736	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10169952	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10170085	1.00[ASN][1000 genomes]
rs10171824	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10172337	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10174122	1.00[ASN][1000 genomes]
rs10174952	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10177339	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10177917	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10178328	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10178743	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10178969	0.96[EUR][1000 genomes]
rs10179002	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10179972	1.00[ASN][1000 genomes]
rs10181606	0.96[EUR][1000 genomes]
rs10181872	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10182328	1.00[ASN][1000 genomes]
rs10182531	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10182637	1.00[ASN][1000 genomes]
rs10184389	1.00[ASN][1000 genomes]
rs10185003	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10185694	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10186436	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10187336	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10187589	0.96[EUR][1000 genomes]
rs10187808	1.00[ASN][1000 genomes]
rs10187975	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10188565	1.00[ASN][1000 genomes]
rs10189469	1.00[ASN][1000 genomes]
rs10190096	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10191409	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10191847	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10193669	0.96[EUR][1000 genomes]
rs10193984	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10194053	0.96[EUR][1000 genomes]
rs10194834	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10194934	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10196089	0.96[EUR][1000 genomes]
rs10196323	0.96[EUR][1000 genomes]
rs10196675	0.96[EUR][1000 genomes]
rs10196977	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10198744	1.00[ASN][1000 genomes]
rs10200629	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10201372	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10201772	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10201984	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10202436	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10202723	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10202780	0.96[EUR][1000 genomes]
rs10202907	0.96[EUR][1000 genomes]
rs10203516	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10203719	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10204110	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10204767	1.00[ASN][1000 genomes]
rs10205090	0.96[EUR][1000 genomes]
rs10205139	0.96[EUR][1000 genomes]
rs10205215	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10205775	1.00[ASN][1000 genomes]
rs10206086	0.96[EUR][1000 genomes]
rs10206562	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10207004	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10208826	0.96[EUR][1000 genomes]
rs10208917	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10209758	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10221749	1.00[ASN][1000 genomes]
rs10221861	1.00[ASN][1000 genomes]
rs10439311	1.00[ASN][1000 genomes]
rs10439312	1.00[ASN][1000 genomes]
rs10469647	1.00[ASN][1000 genomes]
rs10931412	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10931413	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12165153	0.96[EUR][1000 genomes]
rs12328504	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12328515	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12328914	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13383723	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13386772	0.96[EUR][1000 genomes]
rs13387876	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13387877	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13388039	1.00[ASN][1000 genomes]
rs13388366	0.96[EUR][1000 genomes]
rs13388779	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13389403	0.96[EUR][1000 genomes]
rs13391841	1.00[ASN][1000 genomes]
rs13391984	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13392896	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13392978	0.96[EUR][1000 genomes]
rs13394718	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13396640	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13396910	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13396980	0.96[EUR][1000 genomes]
rs13400624	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13401179	0.96[EUR][1000 genomes]
rs13402678	1.00[ASN][1000 genomes]
rs13402923	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13405157	0.92[EUR][1000 genomes]
rs13405433	1.00[ASN][1000 genomes]
rs13406037	0.96[EUR][1000 genomes]
rs13406041	0.96[EUR][1000 genomes]
rs13407353	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13407452	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13407566	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13409317	0.96[EUR][1000 genomes]
rs13409397	1.00[ASN][1000 genomes]
rs13413979	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13414763	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13418443	1.00[ASN][1000 genomes]
rs13419269	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13419984	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13420832	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13423429	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13423654	1.00[ASN][1000 genomes]
rs13424586	1.00[ASN][1000 genomes]
rs13425539	1.00[ASN][1000 genomes]
rs13425989	1.00[ASN][1000 genomes]
rs13426353	0.96[EUR][1000 genomes]
rs13426851	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13427051	0.96[EUR][1000 genomes]
rs13427092	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13427686	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13427692	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13428976	0.96[EUR][1000 genomes]
rs13429203	0.96[EUR][1000 genomes]
rs13430496	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13430575	0.96[EUR][1000 genomes]
rs13430587	0.96[EUR][1000 genomes]
rs13430671	0.92[EUR][1000 genomes]
rs13430879	0.92[EUR][1000 genomes]
rs13430915	0.92[EUR][1000 genomes]
rs13431292	0.96[EUR][1000 genomes]
rs13432036	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13432963	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28368169	1.00[ASN][1000 genomes]
rs28414300	1.00[ASN][1000 genomes]
rs28433254	1.00[ASN][1000 genomes]
rs28509172	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28545536	1.00[ASN][1000 genomes]
rs28567040	1.00[ASN][1000 genomes]
rs28627748	0.96[EUR][1000 genomes]
rs28679474	1.00[ASN][1000 genomes]
rs28760459	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55808493	1.00[ASN][1000 genomes]
rs55819631	1.00[ASN][1000 genomes]
rs56900526	1.00[ASN][1000 genomes]
rs56996340	1.00[ASN][1000 genomes]
rs57187765	1.00[ASN][1000 genomes]
rs57215654	1.00[ASN][1000 genomes]
rs57398906	1.00[ASN][1000 genomes]
rs57458325	1.00[ASN][1000 genomes]
rs57525746	1.00[ASN][1000 genomes]
rs57598703	1.00[ASN][1000 genomes]
rs58396131	1.00[ASN][1000 genomes]
rs59506401	1.00[ASN][1000 genomes]
rs59826931	1.00[ASN][1000 genomes]
rs59872509	1.00[ASN][1000 genomes]
rs60056080	1.00[ASN][1000 genomes]
rs60341298	1.00[ASN][1000 genomes]
rs60708586	1.00[ASN][1000 genomes]
rs61154892	1.00[ASN][1000 genomes]
rs61625679	1.00[ASN][1000 genomes]
rs6711766	0.96[EUR][1000 genomes]
rs6717036	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6724634	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6724646	0.96[EUR][1000 genomes]
rs6725458	0.96[EUR][1000 genomes]
rs6725599	0.96[EUR][1000 genomes]
rs6728197	0.96[EUR][1000 genomes]
rs6737615	0.96[EUR][1000 genomes]
rs6740723	0.92[EUR][1000 genomes]
rs6740742	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6740926	0.96[EUR][1000 genomes]
rs6740999	0.96[EUR][1000 genomes]
rs6746050	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6754272	0.92[EUR][1000 genomes]
rs6755665	0.96[EUR][1000 genomes]
rs6757134	0.96[EUR][1000 genomes]
rs7355598	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73978605	1.00[ASN][1000 genomes]
rs73980165	1.00[ASN][1000 genomes]
rs73980173	1.00[ASN][1000 genomes]
rs73980174	1.00[ASN][1000 genomes]
rs73980175	1.00[ASN][1000 genomes]
rs73980177	1.00[ASN][1000 genomes]
rs73980180	1.00[ASN][1000 genomes]
rs73980182	1.00[ASN][1000 genomes]
rs73980183	1.00[ASN][1000 genomes]
rs73980187	1.00[ASN][1000 genomes]
rs73980188	1.00[ASN][1000 genomes]
rs73980190	1.00[ASN][1000 genomes]
rs73980191	1.00[ASN][1000 genomes]
rs73980192	1.00[ASN][1000 genomes]
rs73980193	1.00[ASN][1000 genomes]
rs73980194	1.00[ASN][1000 genomes]
rs73980195	1.00[ASN][1000 genomes]
rs73980196	1.00[ASN][1000 genomes]
rs73980197	1.00[ASN][1000 genomes]
rs73980198	1.00[ASN][1000 genomes]
rs73980199	1.00[ASN][1000 genomes]
rs73980201	1.00[ASN][1000 genomes]
rs73980202	1.00[ASN][1000 genomes]
rs73982004	1.00[ASN][1000 genomes]
rs73982007	1.00[ASN][1000 genomes]
rs73982032	1.00[ASN][1000 genomes]
rs73982033	1.00[ASN][1000 genomes]
rs73982034	1.00[ASN][1000 genomes]
rs73982037	1.00[ASN][1000 genomes]
rs7558500	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7561643	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7562592	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7566271	1.00[ASN][1000 genomes]
rs7569974	1.00[ASN][1000 genomes]
rs7571181	0.96[EUR][1000 genomes]
rs7572416	0.96[EUR][1000 genomes]
rs7574439	0.96[EUR][1000 genomes]
rs7584984	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7586032	0.96[EUR][1000 genomes]
rs7592383	0.96[EUR][1000 genomes]
rs7597402	0.96[EUR][1000 genomes]
rs7597614	0.96[EUR][1000 genomes]
rs7599676	1.00[ASN][1000 genomes]
rs7606348	0.96[EUR][1000 genomes]
rs7609327	1.00[ASN][1000 genomes]
rs9288164	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9808058	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533029	chr2:189812229-190554339	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv875613	chr2:189999011-190324685	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv875614	chr2:190110841-190254758	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv875615	chr2:190215527-190444392	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:190215800-190228400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr2:190216400-190225400	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr2:190221800-190222800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr2:190221800-190222800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr2:190222000-190222800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr2:190222000-190227800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr2:190222200-190222800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr2:190222600-190222800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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