Variant report

Variant	rs28545536
Chromosome Location	chr2:190260537-190260538
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 169 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:165)

rs_ID	r²[population]
rs10153543	1.00[ASN][1000 genomes]
rs10153951	1.00[ASN][1000 genomes]
rs10166669	1.00[ASN][1000 genomes]
rs10166763	1.00[ASN][1000 genomes]
rs10168736	1.00[ASN][1000 genomes]
rs10169952	1.00[ASN][1000 genomes]
rs10170085	1.00[ASN][1000 genomes]
rs10172337	1.00[ASN][1000 genomes]
rs10174122	1.00[ASN][1000 genomes]
rs10174725	1.00[ASN][1000 genomes]
rs10174952	1.00[ASN][1000 genomes]
rs10177339	1.00[ASN][1000 genomes]
rs10177917	1.00[ASN][1000 genomes]
rs10178328	1.00[ASN][1000 genomes]
rs10178743	1.00[ASN][1000 genomes]
rs10179002	1.00[ASN][1000 genomes]
rs10179972	1.00[ASN][1000 genomes]
rs10181872	1.00[ASN][1000 genomes]
rs10182328	1.00[ASN][1000 genomes]
rs10182531	1.00[ASN][1000 genomes]
rs10182637	1.00[ASN][1000 genomes]
rs10184389	1.00[ASN][1000 genomes]
rs10185003	1.00[ASN][1000 genomes]
rs10185694	1.00[ASN][1000 genomes]
rs10186436	1.00[ASN][1000 genomes]
rs10187336	1.00[ASN][1000 genomes]
rs10187808	1.00[ASN][1000 genomes]
rs10187975	1.00[ASN][1000 genomes]
rs10188565	1.00[ASN][1000 genomes]
rs10189469	1.00[ASN][1000 genomes]
rs10190096	1.00[ASN][1000 genomes]
rs10191409	1.00[ASN][1000 genomes]
rs10191847	1.00[ASN][1000 genomes]
rs10193984	1.00[ASN][1000 genomes]
rs10194834	1.00[ASN][1000 genomes]
rs10194934	1.00[ASN][1000 genomes]
rs10196977	1.00[ASN][1000 genomes]
rs10198744	1.00[ASN][1000 genomes]
rs10200629	1.00[ASN][1000 genomes]
rs10201372	1.00[ASN][1000 genomes]
rs10201984	1.00[ASN][1000 genomes]
rs10202436	1.00[ASN][1000 genomes]
rs10202723	1.00[ASN][1000 genomes]
rs10203516	1.00[ASN][1000 genomes]
rs10203719	1.00[ASN][1000 genomes]
rs10204110	1.00[ASN][1000 genomes]
rs10204767	1.00[ASN][1000 genomes]
rs10205215	1.00[ASN][1000 genomes]
rs10205775	1.00[ASN][1000 genomes]
rs10206562	1.00[ASN][1000 genomes]
rs10207004	1.00[ASN][1000 genomes]
rs10207860	0.87[EUR][1000 genomes]
rs10208917	1.00[ASN][1000 genomes]
rs10209758	1.00[ASN][1000 genomes]
rs10221749	1.00[ASN][1000 genomes]
rs10221861	1.00[ASN][1000 genomes]
rs10439311	1.00[ASN][1000 genomes]
rs10439312	1.00[ASN][1000 genomes]
rs10469647	1.00[ASN][1000 genomes]
rs10931412	1.00[ASN][1000 genomes]
rs10931413	1.00[ASN][1000 genomes]
rs12328504	1.00[ASN][1000 genomes]
rs12328515	1.00[ASN][1000 genomes]
rs12328914	1.00[ASN][1000 genomes]
rs13383723	1.00[ASN][1000 genomes]
rs13387876	1.00[ASN][1000 genomes]
rs13387877	1.00[ASN][1000 genomes]
rs13388039	1.00[ASN][1000 genomes]
rs13388779	1.00[ASN][1000 genomes]
rs13391841	1.00[ASN][1000 genomes]
rs13392896	1.00[ASN][1000 genomes]
rs13394718	1.00[ASN][1000 genomes]
rs13396640	1.00[ASN][1000 genomes]
rs13396910	1.00[ASN][1000 genomes]
rs13400624	1.00[ASN][1000 genomes]
rs13402678	1.00[ASN][1000 genomes]
rs13402923	1.00[ASN][1000 genomes]
rs13405433	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13407353	1.00[ASN][1000 genomes]
rs13407452	1.00[ASN][1000 genomes]
rs13407566	1.00[ASN][1000 genomes]
rs13409397	1.00[ASN][1000 genomes]
rs13413979	1.00[ASN][1000 genomes]
rs13414763	1.00[ASN][1000 genomes]
rs13418443	1.00[ASN][1000 genomes]
rs13419269	1.00[ASN][1000 genomes]
rs13419984	1.00[ASN][1000 genomes]
rs13420832	1.00[ASN][1000 genomes]
rs13423429	1.00[ASN][1000 genomes]
rs13423654	1.00[ASN][1000 genomes]
rs13424586	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13425539	1.00[ASN][1000 genomes]
rs13425989	1.00[ASN][1000 genomes]
rs13426851	1.00[ASN][1000 genomes]
rs13427092	1.00[ASN][1000 genomes]
rs13427686	1.00[ASN][1000 genomes]
rs13432036	1.00[ASN][1000 genomes]
rs13432963	1.00[ASN][1000 genomes]
rs28368169	1.00[ASN][1000 genomes]
rs28414300	1.00[ASN][1000 genomes]
rs28433254	1.00[ASN][1000 genomes]
rs28567040	1.00[ASN][1000 genomes]
rs28679474	1.00[ASN][1000 genomes]
rs55808493	1.00[ASN][1000 genomes]
rs55819631	1.00[ASN][1000 genomes]
rs56996340	1.00[ASN][1000 genomes]
rs57215654	1.00[ASN][1000 genomes]
rs57398906	1.00[ASN][1000 genomes]
rs57458325	1.00[ASN][1000 genomes]
rs57598703	1.00[ASN][1000 genomes]
rs58396131	1.00[ASN][1000 genomes]
rs59506401	1.00[ASN][1000 genomes]
rs59826931	1.00[ASN][1000 genomes]
rs59872509	1.00[ASN][1000 genomes]
rs60056080	1.00[ASN][1000 genomes]
rs60708586	1.00[ASN][1000 genomes]
rs61154892	1.00[ASN][1000 genomes]
rs61625679	1.00[ASN][1000 genomes]
rs6414123	0.87[EUR][1000 genomes]
rs6717036	1.00[ASN][1000 genomes]
rs6724634	1.00[ASN][1000 genomes]
rs6746050	1.00[ASN][1000 genomes]
rs6761847	0.87[EUR][1000 genomes]
rs7355598	1.00[ASN][1000 genomes]
rs73978605	1.00[ASN][1000 genomes]
rs73980173	1.00[ASN][1000 genomes]
rs73980174	1.00[ASN][1000 genomes]
rs73980175	1.00[ASN][1000 genomes]
rs73980177	1.00[ASN][1000 genomes]
rs73980180	1.00[ASN][1000 genomes]
rs73980182	1.00[ASN][1000 genomes]
rs73980183	1.00[ASN][1000 genomes]
rs73980187	1.00[ASN][1000 genomes]
rs73980188	1.00[ASN][1000 genomes]
rs73980190	1.00[ASN][1000 genomes]
rs73980191	1.00[ASN][1000 genomes]
rs73980192	1.00[ASN][1000 genomes]
rs73980193	1.00[ASN][1000 genomes]
rs73980194	1.00[ASN][1000 genomes]
rs73980195	1.00[ASN][1000 genomes]
rs73980196	1.00[ASN][1000 genomes]
rs73980197	1.00[ASN][1000 genomes]
rs73980198	1.00[ASN][1000 genomes]
rs73980199	1.00[ASN][1000 genomes]
rs73980201	1.00[ASN][1000 genomes]
rs73980202	1.00[ASN][1000 genomes]
rs73982004	1.00[ASN][1000 genomes]
rs73982007	1.00[ASN][1000 genomes]
rs73982032	1.00[ASN][1000 genomes]
rs73982033	1.00[ASN][1000 genomes]
rs73982034	1.00[ASN][1000 genomes]
rs73982037	1.00[ASN][1000 genomes]
rs7558500	1.00[ASN][1000 genomes]
rs7561643	1.00[ASN][1000 genomes]
rs7562592	1.00[ASN][1000 genomes]
rs7566271	1.00[ASN][1000 genomes]
rs7569974	1.00[ASN][1000 genomes]
rs7582435	0.87[EUR][1000 genomes]
rs7584984	1.00[ASN][1000 genomes]
rs7599216	0.87[EUR][1000 genomes]
rs7599676	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7606355	0.87[EUR][1000 genomes]
rs7609327	1.00[ASN][1000 genomes]
rs9288164	1.00[ASN][1000 genomes]
rs9808058	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533029	chr2:189812229-190554339	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv875613	chr2:189999011-190324685	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv875615	chr2:190215527-190444392	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	esv3451292	chr2:190225623-190266276	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:190253400-190268000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr2:190258800-190264400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr2:190258800-190272000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr2:190258800-190272600	Weak transcription	Aorta	Aorta
5	chr2:190260400-190260600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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