The 2.0 version of rSNPBase

Variant report

Variant rs58258584
Chromosome Location chr2:189960165-189960166
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:52 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:189895600-189965200 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
2 chr2:189896200-189962400 Weak transcription Left Ventricle heart
3 chr2:189900800-189964400 Weak transcription ES-WA7 Cell Line embryonic stem cell
4 chr2:189912400-189961600 Weak transcription ES-I3 Cell Line embryonic stem cell
5 chr2:189922800-189980800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
6 chr2:189933000-189960400 Weak transcription Placenta Amnion Placenta Amnion
7 chr2:189933000-189980200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
8 chr2:189936600-189969200 Weak transcription Liver Liver
9 chr2:189941200-189975000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
10 chr2:189942800-189961800 Weak transcription Aorta Aorta
11 chr2:189947200-189961200 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
12 chr2:189947600-189961800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
13 chr2:189947600-189980800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
14 chr2:189948200-189980600 Weak transcription Placenta Placenta
15 chr2:189948600-189974800 Weak transcription Breast Myoepithelial Primary Cells Breast
16 chr2:189950200-189961600 Weak transcription Sigmoid Colon Sigmoid Colon
17 chr2:189950800-189961400 Weak transcription Fetal Kidney kidney
18 chr2:189950800-189977800 Weak transcription Fetal Intestine Large intestine
19 chr2:189951800-189961400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
20 chr2:189952000-189961600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
21 chr2:189954800-189980400 Weak transcription Ovary ovary
22 chr2:189955800-189960600 Genic enhancers NHDF-Ad bronchial
23 chr2:189956800-189962600 Genic enhancers HSMM muscle
24 chr2:189957000-189960200 Weak transcription HUVEC blood vessel
25 chr2:189957000-189961600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
26 chr2:189957400-189960800 Enhancers Fetal Lung lung
27 chr2:189958000-189961800 Weak transcription Fetal Intestine Small intestine
28 chr2:189958000-189962000 Genic enhancers A549 lung
29 chr2:189958000-189968000 Weak transcription Stomach Smooth Muscle stomach
30 chr2:189958200-189981000 Weak transcription Fetal Stomach stomach
31 chr2:189958400-189960800 Genic enhancers NHLF lung
32 chr2:189958400-189961000 Genic enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
33 chr2:189958600-189960800 Genic enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
34 chr2:189959400-189960200 Active TSS Fetal Brain Male brain
35 chr2:189959400-189960400 Strong transcription HUES6 Cell Line embryonic stem cell
36 chr2:189959400-189960600 Strong transcription Foreskin Fibroblast Primary Cells skin02 Skin
37 chr2:189959400-189960800 Genic enhancers NH-A brain
38 chr2:189959400-189961200 Genic enhancers Osteobl bone
39 chr2:189959400-189962200 Genic enhancers IMR90 fetal lung fibroblasts Cell Line lung
40 chr2:189959400-189962600 Strong transcription Fetal Muscle Leg muscle
41 chr2:189959400-189963200 Genic enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
42 chr2:189959600-189960200 Genic enhancers Duodenum Smooth Muscle Duodenum
43 chr2:189959600-189960400 Genic enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
44 chr2:189959600-189960400 Strong transcription Colon Smooth Muscle Colon
45 chr2:189959600-189960800 Genic enhancers Foreskin Fibroblast Primary Cells skin01 Skin
46 chr2:189959600-189960800 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
47 chr2:189959600-189960800 Enhancers Fetal Heart heart
48 chr2:189959600-189960800 Strong transcription Fetal Muscle Trunk muscle
49 chr2:189959600-189960800 Genic enhancers HSMMtube muscle
50 chr2:189959600-189962800 Genic enhancers Muscle Satellite Cultured Cells --

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Last update: Aug 31, 2015