The 2.0 version of rSNPBase

Variant report

Variant rs73978855
Chromosome Location chr2:189958182-189958183
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:54 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:189895600-189965200 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
2 chr2:189896200-189962400 Weak transcription Left Ventricle heart
3 chr2:189900800-189964400 Weak transcription ES-WA7 Cell Line embryonic stem cell
4 chr2:189912400-189961600 Weak transcription ES-I3 Cell Line embryonic stem cell
5 chr2:189922800-189980800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
6 chr2:189933000-189960400 Weak transcription Placenta Amnion Placenta Amnion
7 chr2:189933000-189980200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
8 chr2:189936600-189969200 Weak transcription Liver Liver
9 chr2:189941200-189975000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
10 chr2:189942800-189961800 Weak transcription Aorta Aorta
11 chr2:189947200-189961200 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
12 chr2:189947600-189961800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
13 chr2:189947600-189980800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
14 chr2:189948200-189959200 Weak transcription Fetal Brain Male brain
15 chr2:189948200-189980600 Weak transcription Placenta Placenta
16 chr2:189948600-189974800 Weak transcription Breast Myoepithelial Primary Cells Breast
17 chr2:189950200-189961600 Weak transcription Sigmoid Colon Sigmoid Colon
18 chr2:189950800-189961400 Weak transcription Fetal Kidney kidney
19 chr2:189950800-189977800 Weak transcription Fetal Intestine Large intestine
20 chr2:189951800-189961400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
21 chr2:189952000-189961600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
22 chr2:189954800-189980400 Weak transcription Ovary ovary
23 chr2:189955400-189959600 Weak transcription Duodenum Smooth Muscle Duodenum
24 chr2:189955800-189960600 Genic enhancers NHDF-Ad bronchial
25 chr2:189956200-189958200 Genic enhancers NH-A brain
26 chr2:189956200-189959800 Enhancers Adipose Nuclei Adipose
27 chr2:189956600-189958200 Genic enhancers IMR90 fetal lung fibroblasts Cell Line lung
28 chr2:189956800-189962600 Genic enhancers HSMM muscle
29 chr2:189957000-189958200 Enhancers Skeletal Muscle Male skeletal muscle
30 chr2:189957000-189959800 Enhancers Rectal Smooth Muscle rectum
31 chr2:189957000-189960200 Weak transcription HUVEC blood vessel
32 chr2:189957000-189961600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
33 chr2:189957200-189958800 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
34 chr2:189957200-189959400 Weak transcription HUES6 Cell Line embryonic stem cell
35 chr2:189957200-189959400 Weak transcription Fetal Muscle Leg muscle
36 chr2:189957400-189958200 Enhancers Colon Smooth Muscle Colon
37 chr2:189957400-189958200 Enhancers Fetal Stomach stomach
38 chr2:189957400-189958600 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
39 chr2:189957400-189958800 Enhancers HSMMtube muscle
40 chr2:189957400-189960800 Enhancers Fetal Lung lung
41 chr2:189957600-189958400 Enhancers NHLF lung
42 chr2:189957800-189958400 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
43 chr2:189957800-189959200 Enhancers Muscle Satellite Cultured Cells --
44 chr2:189957800-189959400 Enhancers Osteobl bone
45 chr2:189958000-189958200 Flanking Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
46 chr2:189958000-189958200 Flanking Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
47 chr2:189958000-189958200 Flanking Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
48 chr2:189958000-189959600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
49 chr2:189958000-189959600 Weak transcription Fetal Heart heart
50 chr2:189958000-189959600 Weak transcription Fetal Muscle Trunk muscle

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Last update: Aug 31, 2015