Variant report

Variant	rs10175054
Chromosome Location	chr2:206000904-206000905
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:205998792..206000705-chr2:206000789..206004253,3	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10932097	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1100394	1.00[ASN][1000 genomes]
rs11899425	0.93[ASN][1000 genomes]
rs12465268	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12466813	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12477364	0.82[ASN][1000 genomes]
rs12477797	0.85[ASN][1000 genomes]
rs13427801	0.85[ASN][1000 genomes]
rs1347305	0.87[ASN][1000 genomes]
rs1368942	0.94[ASN][1000 genomes]
rs1510774	0.80[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs16836942	0.88[ASN][1000 genomes]
rs16836950	0.88[ASN][1000 genomes]
rs16836961	0.88[ASN][1000 genomes]
rs16837000	0.96[ASN][1000 genomes]
rs16837012	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16837019	0.98[ASN][1000 genomes]
rs16837021	1.00[ASN][1000 genomes]
rs1897781	0.88[ASN][1000 genomes]
rs2289023	0.94[ASN][1000 genomes]
rs35505346	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4675499	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4675501	0.84[ASN][1000 genomes]
rs62172701	0.91[ASN][1000 genomes]
rs6435271	0.86[ASN][1000 genomes]
rs6435272	0.86[ASN][1000 genomes]
rs73057184	0.88[ASN][1000 genomes]
rs7560015	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7565979	0.94[ASN][1000 genomes]
rs849106	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs849107	0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs849110	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs849116	0.99[ASN][1000 genomes]
rs849120	0.98[ASN][1000 genomes]
rs849121	0.96[ASN][1000 genomes]
rs849124	0.97[ASN][1000 genomes]
rs849129	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998485	chr2:205407813-206184006	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv536122	chr2:205407813-206184006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1010210	chr2:205489653-206076013	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv16739	chr2:205898770-206127984	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
5	nsv1000779	chr2:205969138-206064554	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv1009424	chr2:205969138-206078240	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv525418	chr2:205969220-206077607	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv875729	chr2:205972555-206027314	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:205953400-206007200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr2:205970000-206026000	Weak transcription	HSMMtube	muscle
3	chr2:205976800-206024400	Weak transcription	Aorta	Aorta
4	chr2:205979400-206014600	Weak transcription	Pancreas	Pancrea
5	chr2:205982600-206003000	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr2:205986000-206004400	Weak transcription	Stomach Mucosa	stomach
7	chr2:205989000-206003400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr2:205990600-206003000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr2:205990600-206005600	Weak transcription	Left Ventricle	heart
10	chr2:205991000-206002800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr2:205991000-206004200	Weak transcription	Adipose Nuclei	Adipose
12	chr2:205991000-206004600	Weak transcription	Fetal Intestine Large	intestine
13	chr2:205991000-206036600	Weak transcription	HSMM	muscle
14	chr2:205994600-206025800	Weak transcription	Fetal Kidney	kidney
15	chr2:205995600-206004000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr2:205998200-206002400	Weak transcription	Lung	lung
17	chr2:205998800-206003800	Weak transcription	Fetal Lung	lung
18	chr2:206000800-206004600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links