Variant report

Variant	rs13427801
Chromosome Location	chr2:206021333-206021334
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10175054	0.85[ASN][1000 genomes]
rs10932097	0.84[ASN][1000 genomes]
rs1100394	0.85[ASN][1000 genomes]
rs11899425	0.83[ASN][1000 genomes]
rs12465268	0.84[ASN][1000 genomes]
rs12466813	0.85[ASN][1000 genomes]
rs1347305	0.97[ASN][1000 genomes]
rs1368942	0.81[ASN][1000 genomes]
rs1510774	0.91[JPT][hapmap]
rs16837000	0.85[ASN][1000 genomes]
rs16837012	0.85[ASN][1000 genomes]
rs16837019	0.83[ASN][1000 genomes]
rs16837021	0.85[ASN][1000 genomes]
rs2289023	0.85[ASN][1000 genomes]
rs35505346	0.90[ASN][1000 genomes]
rs4675501	0.93[ASN][1000 genomes]
rs6435271	0.99[ASN][1000 genomes]
rs6435272	0.97[ASN][1000 genomes]
rs7560015	0.85[ASN][1000 genomes]
rs7565979	0.81[ASN][1000 genomes]
rs849106	0.85[ASN][1000 genomes]
rs849107	0.87[ASN][1000 genomes]
rs849110	0.85[ASN][1000 genomes]
rs849116	0.86[ASN][1000 genomes]
rs849120	0.86[ASN][1000 genomes]
rs849121	0.86[ASN][1000 genomes]
rs849124	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998485	chr2:205407813-206184006	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv536122	chr2:205407813-206184006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1010210	chr2:205489653-206076013	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv16739	chr2:205898770-206127984	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
5	nsv1000779	chr2:205969138-206064554	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv1009424	chr2:205969138-206078240	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv525418	chr2:205969220-206077607	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv875729	chr2:205972555-206027314	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
9	esv3390406	chr2:206018407-206022605	Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:205970000-206026000	Weak transcription	HSMMtube	muscle
2	chr2:205976800-206024400	Weak transcription	Aorta	Aorta
3	chr2:205991000-206036600	Weak transcription	HSMM	muscle
4	chr2:205994600-206025800	Weak transcription	Fetal Kidney	kidney
5	chr2:206009000-206058000	Weak transcription	Fetal Intestine Small	intestine
6	chr2:206012600-206024200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr2:206014600-206035800	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr2:206015200-206023200	Weak transcription	Pancreas	Pancrea
9	chr2:206020400-206025400	Weak transcription	Stomach Smooth Muscle	stomach
10	chr2:206020600-206024200	Weak transcription	Adipose Nuclei	Adipose
11	chr2:206021200-206024000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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