Variant report

Variant	rs10175364
Chromosome Location	chr2:178596672-178596673
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs1004541	0.82[CHB][hapmap]
rs10192481	0.82[CHB][hapmap]
rs10201180	0.82[CHB][hapmap]
rs10497488	0.85[JPT][hapmap]
rs10497489	0.85[JPT][hapmap]
rs10930805	0.82[CHB][hapmap]
rs11684634	1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12622125	1.00[CHB][hapmap];0.85[JPT][hapmap];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13428806	1.00[CHB][hapmap];0.83[CHD][hapmap]
rs1344916	0.95[ASN][1000 genomes]
rs1344917	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1344925	0.85[JPT][hapmap]
rs1347731	0.82[CHB][hapmap]
rs1370655	0.85[JPT][hapmap]
rs1370662	0.82[CHB][hapmap]
rs1370663	0.82[CHB][hapmap]
rs1370664	0.82[CHB][hapmap]
rs1438037	0.95[ASN][1000 genomes]
rs1438038	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1438039	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1438048	1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1469973	0.82[CHB][hapmap]
rs1561319	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1561320	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs16865726	0.95[ASN][1000 genomes]
rs16865764	0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs16865769	0.85[JPT][hapmap]
rs1866208	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1866209	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1866210	1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1866211	0.95[ASN][1000 genomes]
rs1866212	0.95[ASN][1000 genomes]
rs1898586	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1975321	0.82[CHB][hapmap]
rs1975323	0.85[ASN][1000 genomes]
rs1975324	0.95[ASN][1000 genomes]
rs2164857	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2365889	0.95[ASN][1000 genomes]
rs28700947	0.98[ASN][1000 genomes]
rs28707296	0.85[ASN][1000 genomes]
rs2886498	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs3754991	1.00[CHB][hapmap];0.93[CHD][hapmap];0.85[JPT][hapmap];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3754993	1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs3754994	0.95[ASN][1000 genomes]
rs3770023	0.82[CHB][hapmap]
rs3770028	0.85[JPT][hapmap]
rs3770034	1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs3770042	0.95[ASN][1000 genomes]
rs3770043	0.85[JPT][hapmap]
rs3821007	0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs4893839	1.00[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4893840	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4893980	0.82[CHB][hapmap]
rs4893981	0.82[CHB][hapmap]
rs4893984	0.82[CHB][hapmap]
rs4893985	0.82[CHB][hapmap]
rs4893987	1.00[CHB][hapmap];0.94[CHD][hapmap];0.85[JPT][hapmap];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56362604	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57242051	0.88[ASN][1000 genomes]
rs61334857	0.88[ASN][1000 genomes]
rs6433693	0.95[ASN][1000 genomes]
rs6704720	0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs6718702	0.82[CHB][hapmap]
rs6756240	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs749207	1.00[CHB][hapmap];0.86[JPT][hapmap];0.95[ASN][1000 genomes]
rs749208	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7562835	0.84[JPT][hapmap]
rs7596360	0.82[CHB][hapmap]
rs934798	0.85[JPT][hapmap]
rs934809	0.82[CHB][hapmap]
rs998059	1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs998060	0.95[ASN][1000 genomes]
rs998061	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999086	chr2:178262348-178773585	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv536055	chr2:178262348-178773585	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10175364	FKBP7	cis	parietal	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178593000-178596800	Weak transcription	Ovary	ovary
2	chr2:178594000-178605600	Weak transcription	Fetal Muscle Leg	muscle
3	chr2:178595000-178596800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr2:178595600-178597000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
5	chr2:178595600-178598200	Weak transcription	Fetal Kidney	kidney
6	chr2:178596000-178596800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
7	chr2:178596000-178597000	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
8	chr2:178596200-178596800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
9	chr2:178596400-178596800	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell

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