Variant report

Variant	rs7562835
Chromosome Location	chr2:178638250-178638251
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10175364	0.84[JPT][hapmap]
rs10182017	0.83[ASN][1000 genomes]
rs10497488	1.00[JPT][hapmap]
rs10497489	1.00[JPT][hapmap]
rs11684634	0.84[JPT][hapmap]
rs12622125	1.00[JPT][hapmap]
rs13395965	0.83[ASN][1000 genomes]
rs13396065	0.83[ASN][1000 genomes]
rs13396537	0.83[ASN][1000 genomes]
rs13421315	0.96[ASN][1000 genomes]
rs13421345	0.83[ASN][1000 genomes]
rs13421415	0.96[ASN][1000 genomes]
rs13428806	0.84[JPT][hapmap]
rs1344925	1.00[JPT][hapmap]
rs1370655	1.00[JPT][hapmap]
rs1438038	0.84[JPT][hapmap]
rs1438039	0.85[JPT][hapmap]
rs1438040	0.81[ASN][1000 genomes]
rs1438042	0.83[ASN][1000 genomes]
rs1438048	0.84[JPT][hapmap]
rs1530035	0.93[ASN][1000 genomes]
rs1530036	0.93[ASN][1000 genomes]
rs1561319	0.85[JPT][hapmap]
rs1561320	0.85[JPT][hapmap]
rs16865764	1.00[JPT][hapmap]
rs16865769	1.00[JPT][hapmap]
rs16865791	0.85[JPT][hapmap]
rs1866208	0.85[JPT][hapmap]
rs1866209	0.84[JPT][hapmap]
rs1866210	0.84[JPT][hapmap]
rs1946812	0.85[JPT][hapmap]
rs2164857	0.84[JPT][hapmap]
rs2886498	0.85[JPT][hapmap]
rs3754991	1.00[JPT][hapmap]
rs3754993	0.84[JPT][hapmap]
rs3754996	0.96[ASN][1000 genomes]
rs3770028	1.00[JPT][hapmap]
rs3770034	0.84[JPT][hapmap]
rs3770036	0.88[ASN][1000 genomes]
rs3770043	1.00[JPT][hapmap]
rs3770044	0.94[ASN][1000 genomes]
rs3770045	0.96[ASN][1000 genomes]
rs3770047	0.84[JPT][hapmap]
rs3821007	1.00[JPT][hapmap]
rs3821009	0.85[JPT][hapmap]
rs4893839	0.84[JPT][hapmap]
rs4893840	0.85[JPT][hapmap]
rs4893987	1.00[JPT][hapmap]
rs56314683	0.83[ASN][1000 genomes]
rs56690966	0.83[ASN][1000 genomes]
rs57342997	0.83[ASN][1000 genomes]
rs6433694	0.81[ASN][1000 genomes]
rs6704720	1.00[JPT][hapmap]
rs6706739	0.96[ASN][1000 genomes]
rs6709966	0.83[ASN][1000 genomes]
rs6718100	0.81[ASN][1000 genomes]
rs6718657	0.82[ASN][1000 genomes]
rs6718860	0.81[YRI][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6718993	0.82[ASN][1000 genomes]
rs6726253	0.82[ASN][1000 genomes]
rs6726502	0.83[ASN][1000 genomes]
rs6735387	0.93[ASN][1000 genomes]
rs6743821	0.83[ASN][1000 genomes]
rs6751656	0.83[ASN][1000 genomes]
rs6752264	0.83[ASN][1000 genomes]
rs6756240	0.82[JPT][hapmap]
rs6758508	0.82[ASN][1000 genomes]
rs749208	0.85[JPT][hapmap]
rs7563242	0.97[ASN][1000 genomes]
rs7567851	0.84[JPT][hapmap]
rs7605091	0.96[ASN][1000 genomes]
rs934798	1.00[JPT][hapmap]
rs998059	0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999086	chr2:178262348-178773585	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv536055	chr2:178262348-178773585	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178638000-178647600	Weak transcription	Primary T killer memory cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links