Variant report

Variant	rs16865791
Chromosome Location	chr2:178668000-178668001
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:178663529..178665445-chr2:178667339..178669141,2	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10497488	0.85[JPT][hapmap]
rs10497489	0.85[JPT][hapmap]
rs12622125	0.85[JPT][hapmap]
rs13018609	0.92[YRI][hapmap]
rs13021998	0.91[YRI][hapmap]
rs1344925	0.85[JPT][hapmap]
rs1370655	0.85[JPT][hapmap]
rs1405649	0.87[AMR][1000 genomes]
rs1438041	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs1438064	0.92[YRI][hapmap]
rs16865764	0.85[JPT][hapmap]
rs16865769	0.85[JPT][hapmap]
rs16865921	0.91[AMR][1000 genomes]
rs1946812	1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3754991	0.85[JPT][hapmap]
rs3770028	0.85[JPT][hapmap]
rs3770043	0.85[JPT][hapmap]
rs3770047	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3770050	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3770054	0.92[YRI][hapmap]
rs3821007	0.85[JPT][hapmap]
rs3821009	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4893987	0.85[JPT][hapmap]
rs57157809	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58442170	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58585905	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs60097472	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61190950	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6704720	0.85[JPT][hapmap]
rs6731237	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs73034255	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73034264	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73034271	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73034272	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73034273	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73034286	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73034288	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73034292	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73036088	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73036090	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73036091	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs753346	0.91[YRI][hapmap]
rs7558482	0.87[AMR][1000 genomes]
rs7562835	0.85[JPT][hapmap]
rs7567851	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7609487	0.92[YRI][hapmap]
rs934798	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999086	chr2:178262348-178773585	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv536055	chr2:178262348-178773585	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv583690	chr2:178638381-178712283	Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178663200-178670000	Weak transcription	Adipose Nuclei	Adipose

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