Variant report

Variant	rs1438041
Chromosome Location	chr2:178640866-178640867
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10497488	1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs1370655	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs16865769	0.94[AMR][1000 genomes]
rs16865791	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs17400325	0.84[AMR][1000 genomes]
rs1946812	0.85[JPT][hapmap]
rs3770043	1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs3770047	0.89[CHB][hapmap];0.85[JPT][hapmap]
rs3821009	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs57427125	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs57877880	0.84[AMR][1000 genomes]
rs58408943	0.84[AMR][1000 genomes]
rs59657949	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs60748325	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs61551597	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62183002	0.94[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62183005	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62183040	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62183042	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62183043	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62183048	0.80[AFR][1000 genomes]
rs62183050	0.80[AFR][1000 genomes]
rs6704966	0.83[YRI][hapmap]
rs6731237	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73030327	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs73030354	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs7566399	0.85[YRI][hapmap]
rs7567851	0.89[CHB][hapmap];0.85[JPT][hapmap]
rs7591504	0.85[YRI][hapmap]
rs934798	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999086	chr2:178262348-178773585	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv536055	chr2:178262348-178773585	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv583690	chr2:178638381-178712283	Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178638000-178647600	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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