Variant report
| Variant | rs62183043 |
|---|---|
| Chromosome Location | chr2:178641532-178641533 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10497488 | 0.96[AFR][1000 genomes];0.94[AMR][1000 genomes] |
| rs1370655 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs1438041 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16865769 | 0.94[AMR][1000 genomes] |
| rs17400325 | 0.84[AMR][1000 genomes] |
| rs3770043 | 0.96[AFR][1000 genomes];0.94[AMR][1000 genomes] |
| rs57427125 | 0.96[AFR][1000 genomes];0.94[AMR][1000 genomes] |
| rs57877880 | 0.84[AMR][1000 genomes] |
| rs58408943 | 0.84[AMR][1000 genomes] |
| rs59657949 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs60748325 | 0.96[AFR][1000 genomes];0.94[AMR][1000 genomes] |
| rs61551597 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62183002 | 0.94[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs62183005 | 1.00[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs62183040 | 1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs62183042 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs62183048 | 0.80[AFR][1000 genomes] |
| rs62183050 | 0.80[AFR][1000 genomes] |
| rs6731237 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73030327 | 0.89[AFR][1000 genomes];0.94[AMR][1000 genomes] |
| rs73030354 | 0.96[AFR][1000 genomes];0.94[AMR][1000 genomes] |
| rs934798 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv999086 | chr2:178262348-178773585 | Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 14 gene(s) | inside rSNPs | diseases |
| 2 | nsv536055 | chr2:178262348-178773585 | Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 14 gene(s) | inside rSNPs | diseases |
| 3 | nsv583690 | chr2:178638381-178712283 | Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:178638000-178647600 | Weak transcription | Primary T killer memory cells from peripheral blood | blood |
