Variant report

Variant	rs59657949
Chromosome Location	chr2:178638076-178638077
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:178628572..178630202-chr2:178634599..178638462,3	K562	blood:
2	chr2:178627223..178631430-chr2:178636962..178640011,3	K562	blood:
3	chr2:178632678..178634797-chr2:178635838..178638323,2	K562	blood:
4	chr2:178636693..178638193-chr8:43095088..43096912,2	MCF-7	breast:
5	chr2:178628288..178628986-chr2:178637325..178638102,2	MCF-7	breast:
6	chr2:178637693..178638193-chr8:43096253..43096754,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10497488	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10497489	0.84[ASN][1000 genomes]
rs10930806	0.84[ASN][1000 genomes]
rs13031632	0.84[ASN][1000 genomes]
rs1344925	0.84[ASN][1000 genomes]
rs1370655	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1438041	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs16865769	0.94[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17400325	0.84[AMR][1000 genomes]
rs34952652	0.84[ASN][1000 genomes]
rs3770028	0.84[ASN][1000 genomes]
rs3770043	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs57427125	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs57877880	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs58408943	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs60748325	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs61551597	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62183002	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62183005	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62183040	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62183042	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62183043	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62183048	0.80[AFR][1000 genomes]
rs62183050	0.80[AFR][1000 genomes]
rs6731237	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73030327	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs73030354	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs934798	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999086	chr2:178262348-178773585	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv536055	chr2:178262348-178773585	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178638000-178647600	Weak transcription	Primary T killer memory cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links