Variant report

Variant	rs7566399
Chromosome Location	chr2:178629934-178629935
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:178624491..178626803-chr2:178628555..178630115,2	K562	blood:
2	chr2:178623467..178625919-chr2:178629707..178632850,3	MCF-7	breast:
3	chr2:178627223..178631430-chr2:178636962..178640011,3	K562	blood:
4	chr2:178615690..178619114-chr2:178629203..178632242,4	K562	blood:
5	chr2:178625497..178630071-chr2:178630619..178633026,4	K562	blood:
6	chr2:178628572..178630202-chr2:178634599..178638462,3	K562	blood:
7	chr2:178629910..178631460-chr2:178633024..178635165,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10497488	0.85[YRI][hapmap]
rs1370655	0.85[YRI][hapmap]
rs1438041	0.85[YRI][hapmap]
rs3770043	0.85[YRI][hapmap]
rs6704966	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs6731237	0.85[YRI][hapmap]
rs73030315	0.84[AFR][1000 genomes]
rs73030325	1.00[AFR][1000 genomes]
rs73030355	1.00[AFR][1000 genomes]
rs7591504	1.00[YRI][hapmap]
rs934798	0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999086	chr2:178262348-178773585	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv536055	chr2:178262348-178773585	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178628600-178630200	Weak transcription	K562	blood
2	chr2:178628600-178631200	Weak transcription	Pancreas	Pancrea
3	chr2:178628600-178632000	Weak transcription	HepG2	liver
4	chr2:178628600-178632600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr2:178628600-178636000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr2:178628600-178636000	Weak transcription	NHEK	skin
7	chr2:178628800-178632400	Weak transcription	Brain Substantia Nigra	brain
8	chr2:178628800-178632600	Weak transcription	Brain Hippocampus Middle	brain
9	chr2:178628800-178632600	Weak transcription	Fetal Heart	heart
10	chr2:178629200-178635400	Weak transcription	Fetal Kidney	kidney

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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