Variant report

Variant	rs73030325
Chromosome Location	chr2:178605405-178605406
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs6704966	0.91[AFR][1000 genomes]
rs73030315	0.84[AFR][1000 genomes]
rs73030355	1.00[AFR][1000 genomes]
rs7566399	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999086	chr2:178262348-178773585	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv536055	chr2:178262348-178773585	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178594000-178605600	Weak transcription	Fetal Muscle Leg	muscle
2	chr2:178597800-178610200	Weak transcription	Adipose Nuclei	Adipose
3	chr2:178603000-178606400	Enhancers	Fetal Stomach	stomach
4	chr2:178603400-178616000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr2:178604200-178606000	Weak transcription	K562	blood
6	chr2:178604600-178609400	Enhancers	Fetal Kidney	kidney
7	chr2:178605000-178606000	Enhancers	Fetal Lung	lung
8	chr2:178605200-178606000	Enhancers	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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