Variant report
| Variant | rs16865921 |
|---|---|
| Chromosome Location | chr2:178792461-178792462 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:36)
| rs_ID | r2[population] |
|---|---|
| rs10201731 | 0.84[ASN][1000 genomes] |
| rs1025598 | 1.00[CHB][hapmap] |
| rs12618253 | 0.85[ASN][1000 genomes] |
| rs12618537 | 1.00[CHB][hapmap];0.82[EUR][1000 genomes] |
| rs13018609 | 0.81[ASN][1000 genomes] |
| rs1405649 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs16865791 | 0.91[AMR][1000 genomes] |
| rs16865819 | 0.81[ASN][1000 genomes] |
| rs16866025 | 1.00[CHB][hapmap] |
| rs16866032 | 1.00[CHB][hapmap];0.82[EUR][1000 genomes] |
| rs17329531 | 0.81[ASN][1000 genomes] |
| rs1946812 | 0.87[AMR][1000 genomes] |
| rs3108451 | 0.82[ASN][1000 genomes] |
| rs34365395 | 0.81[ASN][1000 genomes] |
| rs35873373 | 0.81[ASN][1000 genomes] |
| rs3770050 | 0.91[AMR][1000 genomes] |
| rs3770054 | 0.81[ASN][1000 genomes] |
| rs57157809 | 0.87[AMR][1000 genomes] |
| rs58442170 | 0.87[AMR][1000 genomes] |
| rs58585905 | 0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs60097472 | 0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs61190950 | 0.91[AMR][1000 genomes] |
| rs6716206 | 0.83[CHB][hapmap] |
| rs73034255 | 0.91[AMR][1000 genomes] |
| rs73034264 | 0.87[AMR][1000 genomes] |
| rs73034271 | 0.87[AMR][1000 genomes] |
| rs73034272 | 0.87[AMR][1000 genomes] |
| rs73034273 | 0.91[AMR][1000 genomes] |
| rs73034286 | 0.87[AMR][1000 genomes] |
| rs73034288 | 0.91[AMR][1000 genomes] |
| rs73034292 | 0.91[AMR][1000 genomes] |
| rs73036088 | 0.91[AMR][1000 genomes] |
| rs73036090 | 0.91[AMR][1000 genomes] |
| rs73036091 | 0.91[AMR][1000 genomes] |
| rs753346 | 0.84[CHB][hapmap] |
| rs7558482 | 0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv533377 | chr2:178718801-178963463 | Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv1007579 | chr2:178729330-178890946 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv875451 | chr2:178748294-178953409 | Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 4 | nsv998304 | chr2:178756380-178924378 | Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 5 | nsv536056 | chr2:178756380-178924378 | Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:178792400-178794400 | Weak transcription | Liver | Liver |
