Variant report

Variant	rs6716206
Chromosome Location	chr2:178785116-178785117
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10201731	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1025598	0.82[CHB][hapmap]
rs10497480	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11899873	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12618253	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12618537	0.83[CHB][hapmap]
rs1405648	0.82[ASN][1000 genomes]
rs1405649	0.82[CHB][hapmap]
rs16865901	0.82[ASN][1000 genomes]
rs16865906	0.82[ASN][1000 genomes]
rs16865921	0.83[CHB][hapmap];0.86[ASN][1000 genomes]
rs16866000	1.00[CHB][hapmap];0.91[JPT][hapmap];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16866025	0.82[CHB][hapmap]
rs16866032	0.82[CHB][hapmap]
rs17329531	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17330075	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17401986	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1898587	0.82[ASN][1000 genomes]
rs2365899	0.82[ASN][1000 genomes]
rs2695092	0.83[ASN][1000 genomes]
rs2695742	0.83[ASN][1000 genomes]
rs3108451	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs4468852	0.82[ASN][1000 genomes]
rs55841094	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60047236	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6738098	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs753346	0.82[CHB][hapmap]
rs7558482	0.81[ASN][1000 genomes]
rs7570981	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7591800	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs7595479	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533377	chr2:178718801-178963463	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1007579	chr2:178729330-178890946	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv875451	chr2:178748294-178953409	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv998304	chr2:178756380-178924378	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv536056	chr2:178756380-178924378	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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