Variant report

Variant	rs7570981
Chromosome Location	chr2:178712283-178712284
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10201731	0.92[ASN][1000 genomes]
rs10497480	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.85[TSI][hapmap]
rs11899873	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12618253	0.94[ASN][1000 genomes]
rs1405648	0.88[ASW][hapmap];0.81[CHB][hapmap];0.81[CHD][hapmap];0.91[MKK][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs1405649	0.87[CHD][hapmap];0.85[ASN][1000 genomes]
rs16865901	0.85[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs16865906	0.85[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs16866000	1.00[CHB][hapmap];0.87[CHD][hapmap];0.92[JPT][hapmap];0.84[MEX][hapmap];0.85[TSI][hapmap];0.82[ASN][1000 genomes]
rs17329531	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17330075	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.87[ASN][1000 genomes]
rs17401986	0.87[ASN][1000 genomes]
rs1898587	0.81[CHB][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs2365899	0.81[CHB][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs2695092	0.84[ASN][1000 genomes]
rs2695742	0.81[CHB][hapmap];0.84[ASN][1000 genomes]
rs3108451	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4468852	0.88[ASW][hapmap];0.81[CHB][hapmap];0.85[CHD][hapmap];0.89[LWK][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs55841094	0.86[ASN][1000 genomes]
rs58585905	0.83[ASN][1000 genomes]
rs60097472	0.83[ASN][1000 genomes]
rs6716206	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7558482	0.84[ASN][1000 genomes]
rs7588062	0.88[ASW][hapmap];0.81[CHB][hapmap];0.81[CHD][hapmap];0.86[LWK][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap]
rs7591800	1.00[CHB][hapmap]
rs7595479	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999086	chr2:178262348-178773585	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv536055	chr2:178262348-178773585	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv583690	chr2:178638381-178712283	Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv3053	chr2:178690640-178735132	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7570981	FKBP7	cis	parietal	SCAN
rs7570981	SP3	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178699800-178716600	Weak transcription	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links