Variant report
| Variant | rs6738098 |
|---|---|
| Chromosome Location | chr2:178914079-178914080 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10201731 | 0.81[EUR][1000 genomes] |
| rs10211367 | 0.89[YRI][hapmap] |
| rs10497480 | 1.00[CHB][hapmap] |
| rs12618253 | 0.84[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs12618537 | 0.81[ASN][1000 genomes] |
| rs1405648 | 0.81[CHB][hapmap] |
| rs16866000 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs16866032 | 0.86[ASN][1000 genomes] |
| rs17329531 | 1.00[CHB][hapmap] |
| rs17330075 | 1.00[CHB][hapmap];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs17401986 | 0.90[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs1898587 | 0.81[CHB][hapmap] |
| rs2009303 | 0.93[YRI][hapmap] |
| rs2365899 | 0.81[CHB][hapmap] |
| rs2695742 | 0.81[CHB][hapmap] |
| rs3108451 | 1.00[CHB][hapmap] |
| rs4468852 | 0.81[CHB][hapmap] |
| rs55841094 | 0.90[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs60047236 | 0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs6716206 | 1.00[CHB][hapmap];0.81[JPT][hapmap] |
| rs7588062 | 0.81[CHB][hapmap] |
| rs7591800 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs7595479 | 1.00[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv533377 | chr2:178718801-178963463 | Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv875451 | chr2:178748294-178953409 | Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 3 | nsv998304 | chr2:178756380-178924378 | Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 4 | nsv536056 | chr2:178756380-178924378 | Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
