Variant report
| Variant | rs10175701 |
|---|---|
| Chromosome Location | chr2:67204585-67204586 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-C1D-14 | chr2:67203993-67205499 | NONHSAT071255 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:11)
| rs_ID | r2[population] |
|---|---|
| rs10174577 | 0.80[AFR][1000 genomes];0.91[ASN][1000 genomes] |
| rs10180582 | 0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10210389 | 0.81[AFR][1000 genomes];0.91[ASN][1000 genomes] |
| rs10496138 | 0.82[ASN][1000 genomes] |
| rs13409540 | 0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs1362484 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs58683753 | 0.81[ASN][1000 genomes] |
| rs6721312 | 0.84[ASN][1000 genomes] |
| rs6726820 | 0.87[ASN][1000 genomes] |
| rs67764531 | 0.86[ASN][1000 genomes] |
| rs7419773 | 0.84[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1008584 | chr2:67168244-67703601 | Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 21 gene(s) | inside rSNPs | diseases |
| 2 | nsv535775 | chr2:67168244-67703601 | Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 21 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
