Variant report

Variant	rs10175781
Chromosome Location	chr2:77287190-77287191
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10165789	0.85[GIH][hapmap]
rs10185709	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10186927	1.00[CHB][hapmap]
rs10193253	0.85[GIH][hapmap]
rs10195967	0.85[CHB][hapmap]
rs10196670	1.00[CHB][hapmap]
rs10199630	0.85[GIH][hapmap]
rs10204605	1.00[GIH][hapmap]
rs10205089	1.00[GIH][hapmap]
rs10211427	0.80[CHD][hapmap]
rs10211542	1.00[CHB][hapmap]
rs10520170	0.85[GIH][hapmap]
rs11884377	1.00[GIH][hapmap]
rs12713885	0.85[GIH][hapmap]
rs12988557	0.85[GIH][hapmap]
rs13400981	1.00[CHB][hapmap]
rs1446689	0.85[TSI][hapmap]
rs1982340	0.90[CEU][hapmap];0.85[GIH][hapmap];0.83[TSI][hapmap];0.87[EUR][1000 genomes]
rs7562487	0.94[ASW][hapmap];0.93[LWK][hapmap];0.91[MKK][hapmap];0.95[YRI][hapmap]
rs7607753	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs7608223	1.00[YRI][hapmap];0.99[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834266	chr2:77120236-77287504	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv949670	chr2:77125218-77712607	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv997284	chr2:77233426-77303198	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1014895	chr2:77263452-77414507	Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv874331	chr2:77264354-77305123	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
6	nsv458285	chr2:77276201-77345491	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	n/a	n/a	inside rSNPs	diseases
7	nsv582252	chr2:77276201-77345491	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:77286200-77287200	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr2:77286400-77287200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr2:77286400-77287200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr2:77286600-77287200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr2:77286800-77287200	Enhancers	Brain Germinal Matrix	brain
6	chr2:77286800-77287400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr2:77286800-77287400	Enhancers	HUES64 Cell Line	embryonic stem cell

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