Variant report

Variant	rs1982340
Chromosome Location	chr2:77285117-77285118
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10165789	1.00[GIH][hapmap];0.90[JPT][hapmap];0.81[MEX][hapmap];0.82[TSI][hapmap]
rs10175781	0.90[CEU][hapmap];0.85[GIH][hapmap];0.83[TSI][hapmap];0.87[EUR][1000 genomes]
rs10185709	0.88[EUR][1000 genomes]
rs10199630	1.00[GIH][hapmap];0.91[JPT][hapmap]
rs10201531	0.91[GIH][hapmap];0.90[JPT][hapmap]
rs10204605	0.85[GIH][hapmap]
rs10205089	0.85[GIH][hapmap]
rs10520170	1.00[GIH][hapmap];0.91[JPT][hapmap]
rs11884377	0.85[GIH][hapmap]
rs11885408	0.91[JPT][hapmap]
rs11886263	0.91[GIH][hapmap];0.91[JPT][hapmap]
rs12713885	1.00[GIH][hapmap];0.91[JPT][hapmap]
rs12988557	1.00[ASW][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.83[LWK][hapmap];0.81[MEX][hapmap];0.82[TSI][hapmap]
rs13025838	0.91[JPT][hapmap]
rs1446728	0.91[JPT][hapmap]
rs17013381	0.91[JPT][hapmap]
rs17013387	0.91[JPT][hapmap]
rs17013449	0.91[JPT][hapmap]
rs17013758	1.00[CHB][hapmap]
rs17333446	1.00[ASW][hapmap];0.91[JPT][hapmap]
rs17334184	0.89[MEX][hapmap];0.95[TSI][hapmap]
rs17405232	0.81[JPT][hapmap]
rs2067968	0.81[JPT][hapmap]
rs4852420	0.91[JPT][hapmap]
rs4852423	0.91[JPT][hapmap]
rs6750253	0.81[JPT][hapmap]
rs7355718	0.91[JPT][hapmap]
rs7562726	0.81[JPT][hapmap]
rs7577099	0.81[JPT][hapmap]
rs7607753	0.91[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9973564	0.91[JPT][hapmap]
rs9973567	0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834266	chr2:77120236-77287504	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv949670	chr2:77125218-77712607	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv997284	chr2:77233426-77303198	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1014895	chr2:77263452-77414507	Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv874331	chr2:77264354-77305123	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
6	nsv458285	chr2:77276201-77345491	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	n/a	n/a	inside rSNPs	diseases
7	nsv582252	chr2:77276201-77345491	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:77278800-77286400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr2:77280800-77286200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr2:77281600-77286600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr2:77282400-77286800	Weak transcription	Brain Germinal Matrix	brain

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