Variant report

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10165789	1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.91[MKK][hapmap];0.92[ASN][1000 genomes]
rs10187924	0.96[ASN][1000 genomes]
rs10194816	0.96[ASN][1000 genomes]
rs10199630	1.00[JPT][hapmap]
rs10201531	1.00[JPT][hapmap]
rs10205987	1.00[ASN][1000 genomes]
rs10520170	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11885408	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11886263	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12713885	1.00[JPT][hapmap]
rs12988557	1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[MKK][hapmap];1.00[ASN][1000 genomes]
rs13007111	0.96[ASN][1000 genomes]
rs13016203	0.96[ASN][1000 genomes]
rs13025838	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs13414920	0.86[ASN][1000 genomes]
rs1446728	1.00[JPT][hapmap]
rs17013381	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs17013387	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs17013449	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs17333446	1.00[JPT][hapmap]
rs17405232	0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs1947115	0.96[ASN][1000 genomes]
rs1947116	0.96[ASN][1000 genomes]
rs1982340	0.91[JPT][hapmap]
rs34256194	0.92[ASN][1000 genomes]
rs35573263	0.92[ASN][1000 genomes]
rs4852420	1.00[JPT][hapmap]
rs4852421	0.96[ASN][1000 genomes]
rs4852423	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7583560	0.96[ASN][1000 genomes]
rs7607753	0.91[JPT][hapmap]
rs9973564	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9973567	1.00[JPT][hapmap];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874322	chr2:77031247-77209750	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv2752990	chr2:77038541-77217310	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv874327	chr2:77085752-77209750	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv874329	chr2:77096124-77209750	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv874330	chr2:77103719-77209750	Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv834266	chr2:77120236-77287504	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv949670	chr2:77125218-77712607	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:77206200-77211200	Weak transcription	HUVEC	blood vessel
2	chr2:77206600-77211600	Weak transcription	Fetal Lung	lung
3	chr2:77206800-77211600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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