Variant report

Variant	rs17405232
Chromosome Location	chr2:77097164-77097165
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10165789	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10168341	0.80[EUR][1000 genomes]
rs10170002	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs10170138	0.91[CEU][hapmap]
rs10178612	0.91[CEU][hapmap]
rs10186670	0.81[EUR][1000 genomes]
rs10187924	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10193253	0.83[CEU][hapmap]
rs10193590	0.92[CEU][hapmap]
rs10193677	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs10194816	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10195940	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs10199630	0.83[CEU][hapmap];0.91[JPT][hapmap]
rs10201531	0.83[CEU][hapmap];0.90[JPT][hapmap]
rs10204605	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs10205089	0.83[CEU][hapmap];0.80[EUR][1000 genomes]
rs10205987	0.92[ASN][1000 genomes]
rs10207067	0.92[CEU][hapmap]
rs10209929	0.81[EUR][1000 genomes]
rs10221606	0.89[CEU][hapmap]
rs10221841	0.91[CEU][hapmap]
rs10520170	0.92[CEU][hapmap];0.91[JPT][hapmap];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11126566	0.91[CEU][hapmap]
rs11126572	0.89[CEU][hapmap]
rs11126577	0.82[EUR][1000 genomes]
rs11884377	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs11885408	0.84[CEU][hapmap];0.91[JPT][hapmap];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11886263	1.00[CEU][hapmap];0.91[JPT][hapmap];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11886826	0.81[EUR][1000 genomes]
rs11895300	0.82[EUR][1000 genomes]
rs11899785	0.80[EUR][1000 genomes]
rs12713885	0.83[CEU][hapmap];0.91[JPT][hapmap]
rs12988557	0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs13007111	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13016203	0.96[ASN][1000 genomes]
rs13025838	0.83[CEU][hapmap];0.91[JPT][hapmap];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13413625	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs13414920	0.83[CEU][hapmap];0.86[ASN][1000 genomes]
rs13417401	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs13423489	0.82[EUR][1000 genomes]
rs13428376	0.91[CEU][hapmap]
rs1446728	0.84[CEU][hapmap];0.91[JPT][hapmap]
rs1517781	0.91[CEU][hapmap]
rs1517782	0.91[CEU][hapmap]
rs17013381	0.92[CEU][hapmap];0.91[JPT][hapmap];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17013387	0.92[CEU][hapmap];0.91[JPT][hapmap];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17013449	0.83[CEU][hapmap];0.91[JPT][hapmap];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17333150	0.92[CEU][hapmap]
rs17333446	1.00[CEU][hapmap];0.91[JPT][hapmap]
rs1947115	0.96[ASN][1000 genomes]
rs1947116	0.96[ASN][1000 genomes]
rs1982340	0.81[JPT][hapmap]
rs34256194	0.92[ASN][1000 genomes]
rs35573263	0.84[ASN][1000 genomes]
rs4852420	1.00[CEU][hapmap];0.91[JPT][hapmap]
rs4852421	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4852423	1.00[CEU][hapmap];0.91[JPT][hapmap];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4853274	0.92[CEU][hapmap]
rs7355718	0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs7583560	0.96[ASN][1000 genomes]
rs7607753	0.82[JPT][hapmap]
rs9309506	0.81[EUR][1000 genomes]
rs9309507	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs9973564	0.92[CEU][hapmap];0.91[JPT][hapmap];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9973567	0.92[CEU][hapmap];0.91[JPT][hapmap];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005091	chr2:77009508-77112403	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1006086	chr2:77031163-77128651	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv874321	chr2:77031247-77113949	Enhancers Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv874322	chr2:77031247-77209750	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1007648	chr2:77034405-77128651	Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv2752990	chr2:77038541-77217310	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv874323	chr2:77048896-77113949	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv874324	chr2:77048896-77201916	Weak transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv874325	chr2:77053916-77113949	Enhancers Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv458274	chr2:77055883-77113949	Enhancers Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv582250	chr2:77055883-77113949	Enhancers Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv874326	chr2:77055883-77148261	Enhancers Active TSS Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	nsv582251	chr2:77055883-77154515	Enhancers Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	nsv874327	chr2:77085752-77209750	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
15	nsv525625	chr2:77096124-77113949	Enhancers Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
16	nsv874328	chr2:77096124-77196122	Enhancers Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
17	nsv874329	chr2:77096124-77209750	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:77094400-77098400	Enhancers	Muscle Satellite Cultured Cells	--
2	chr2:77095400-77097600	Weak transcription	NH-A	brain
3	chr2:77096800-77098200	Enhancers	HUVEC	blood vessel
4	chr2:77097000-77097400	Enhancers	HUES64 Cell Line	embryonic stem cell

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