Variant report

Variant	rs17333150
Chromosome Location	chr2:77050462-77050463
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10170002	0.86[CEU][hapmap]
rs10170138	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs10176922	0.83[EUR][1000 genomes]
rs10177114	0.83[EUR][1000 genomes]
rs10178612	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs10193590	0.84[CEU][hapmap]
rs10193677	0.85[CEU][hapmap]
rs10196216	0.83[EUR][1000 genomes]
rs10204605	0.85[CEU][hapmap]
rs10207067	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs10221606	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs10221841	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs10520170	0.85[CEU][hapmap]
rs11126566	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs11126569	0.83[EUR][1000 genomes]
rs11126570	0.81[EUR][1000 genomes]
rs11126572	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs11884377	0.85[CEU][hapmap]
rs11886263	0.92[CEU][hapmap]
rs13394235	0.83[EUR][1000 genomes]
rs13413625	0.92[CEU][hapmap]
rs13417401	0.85[CEU][hapmap]
rs13428376	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs1517781	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs1517782	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs17013381	0.85[CEU][hapmap]
rs17013387	0.86[CEU][hapmap]
rs17333446	0.91[CEU][hapmap]
rs17405232	0.92[CEU][hapmap]
rs4852420	0.92[CEU][hapmap]
rs4852423	0.92[CEU][hapmap]
rs4853274	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs55884368	0.83[EUR][1000 genomes]
rs56341225	0.83[EUR][1000 genomes]
rs58518932	0.83[EUR][1000 genomes]
rs61488732	0.82[EUR][1000 genomes]
rs72815441	0.83[EUR][1000 genomes]
rs72815443	0.83[EUR][1000 genomes]
rs72815447	0.83[EUR][1000 genomes]
rs72815448	0.83[EUR][1000 genomes]
rs72815450	0.83[EUR][1000 genomes]
rs72815458	0.83[EUR][1000 genomes]
rs72815459	0.82[EUR][1000 genomes]
rs72815460	0.83[EUR][1000 genomes]
rs72815461	0.83[EUR][1000 genomes]
rs72815462	0.83[EUR][1000 genomes]
rs72815464	0.83[EUR][1000 genomes]
rs72815467	0.83[EUR][1000 genomes]
rs72815468	0.83[EUR][1000 genomes]
rs72815494	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72819212	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9309507	0.86[CEU][hapmap]
rs9973564	0.86[CEU][hapmap]
rs9973567	0.86[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011401	chr2:76982546-77068714	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1005091	chr2:77009508-77112403	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv520715	chr2:77021928-77080291	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1006086	chr2:77031163-77128651	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv874321	chr2:77031247-77113949	Enhancers Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv874322	chr2:77031247-77209750	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv1007648	chr2:77034405-77128651	Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv2752990	chr2:77038541-77217310	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv874323	chr2:77048896-77113949	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv874324	chr2:77048896-77201916	Weak transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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