Variant report

Variant	rs10177114
Chromosome Location	chr2:77024022-77024023
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10170138	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10176922	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10178612	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10196216	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10207067	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10221606	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10221734	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10221841	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11126566	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11126569	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11126570	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11126572	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13390877	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13394235	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13428376	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1517781	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1517782	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4853274	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55796678	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55884368	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56341225	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs58518932	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61488732	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72815441	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72815443	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72815447	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72815448	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72815450	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72815458	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72815459	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72815460	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72815461	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72815462	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72815464	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72815467	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72815468	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72815494	0.83[EUR][1000 genomes]
rs72819212	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011401	chr2:76982546-77068714	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1005091	chr2:77009508-77112403	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv520715	chr2:77021928-77080291	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:77009000-77039000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:77009600-77038200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr2:77021200-77025400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr2:77023800-77024200	Enhancers	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links