Variant report

Variant	rs1517781
Chromosome Location	chr2:77021031-77021032
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10170002	0.85[CEU][hapmap]
rs10170138	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10176922	0.98[EUR][1000 genomes]
rs10177114	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10178612	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs10193590	0.83[CEU][hapmap]
rs10193677	0.84[CEU][hapmap]
rs10196216	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10204605	0.84[CEU][hapmap]
rs10207067	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs10221606	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs10221734	0.88[EUR][1000 genomes]
rs10221841	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10520170	0.84[CEU][hapmap]
rs11126566	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11126568	0.82[CHB][hapmap]
rs11126569	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11126570	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11126571	0.84[CHB][hapmap]
rs11126572	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11884377	0.84[CEU][hapmap]
rs11886263	0.91[CEU][hapmap]
rs13390877	0.94[EUR][1000 genomes]
rs13394235	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13413625	0.92[CEU][hapmap]
rs13417401	0.84[CEU][hapmap]
rs13428376	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs1517782	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs17013381	0.84[CEU][hapmap]
rs17013387	0.85[CEU][hapmap]
rs17333150	1.00[CEU][hapmap]
rs17333446	0.91[CEU][hapmap]
rs17405232	0.91[CEU][hapmap]
rs4852420	0.92[CEU][hapmap]
rs4852423	0.92[CEU][hapmap]
rs4853274	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55796678	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55884368	0.98[EUR][1000 genomes]
rs56341225	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58518932	0.98[EUR][1000 genomes]
rs61488732	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72815441	0.98[EUR][1000 genomes]
rs72815443	0.98[EUR][1000 genomes]
rs72815447	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72815448	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72815450	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72815458	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72815459	0.96[EUR][1000 genomes]
rs72815460	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72815461	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72815462	0.98[EUR][1000 genomes]
rs72815464	0.98[EUR][1000 genomes]
rs72815467	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72815468	0.98[EUR][1000 genomes]
rs72815494	0.82[EUR][1000 genomes]
rs72819212	0.81[EUR][1000 genomes]
rs9309507	0.85[CEU][hapmap]
rs9973564	0.85[CEU][hapmap]
rs9973567	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011401	chr2:76982546-77068714	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv999822	chr2:76994539-77022762	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
3	nsv1005091	chr2:77009508-77112403	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:77009000-77039000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:77009400-77022600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr2:77009600-77038200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr2:77014200-77023800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr2:77020600-77021400	Enhancers	Rectal Mucosa Donor 29	rectum
6	chr2:77020600-77021400	Enhancers	Stomach Mucosa	stomach
7	chr2:77020800-77021400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr2:77021000-77021200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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