Variant report

Variant	rs72815494
Chromosome Location	chr2:77051417-77051418
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10170138	0.83[EUR][1000 genomes]
rs10176922	0.83[EUR][1000 genomes]
rs10177114	0.83[EUR][1000 genomes]
rs10178612	0.83[EUR][1000 genomes]
rs10196216	0.83[EUR][1000 genomes]
rs10207067	0.80[EUR][1000 genomes]
rs10221606	0.83[EUR][1000 genomes]
rs10221841	0.83[EUR][1000 genomes]
rs11126566	0.83[EUR][1000 genomes]
rs11126569	0.83[EUR][1000 genomes]
rs11126570	0.81[EUR][1000 genomes]
rs11126572	0.80[EUR][1000 genomes]
rs13394235	0.83[EUR][1000 genomes]
rs13428376	0.83[EUR][1000 genomes]
rs1517781	0.82[EUR][1000 genomes]
rs1517782	0.83[EUR][1000 genomes]
rs4853274	0.82[EUR][1000 genomes]
rs55884368	0.83[EUR][1000 genomes]
rs56341225	0.83[EUR][1000 genomes]
rs58518932	0.83[EUR][1000 genomes]
rs61488732	0.82[EUR][1000 genomes]
rs72815441	0.83[EUR][1000 genomes]
rs72815443	0.83[EUR][1000 genomes]
rs72815447	0.83[EUR][1000 genomes]
rs72815448	0.83[EUR][1000 genomes]
rs72815450	0.83[EUR][1000 genomes]
rs72815458	0.83[EUR][1000 genomes]
rs72815459	0.82[EUR][1000 genomes]
rs72815460	0.83[EUR][1000 genomes]
rs72815461	0.83[EUR][1000 genomes]
rs72815462	0.83[EUR][1000 genomes]
rs72815464	0.83[EUR][1000 genomes]
rs72815467	0.83[EUR][1000 genomes]
rs72815468	0.83[EUR][1000 genomes]
rs72819212	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011401	chr2:76982546-77068714	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1005091	chr2:77009508-77112403	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv520715	chr2:77021928-77080291	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1006086	chr2:77031163-77128651	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv874321	chr2:77031247-77113949	Enhancers Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv874322	chr2:77031247-77209750	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv1007648	chr2:77034405-77128651	Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv2752990	chr2:77038541-77217310	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv874323	chr2:77048896-77113949	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv874324	chr2:77048896-77201916	Weak transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:77051200-77052400	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr2:77051400-77051600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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