Variant report

Variant	rs1017742
Chromosome Location	chr6:81650550-81650551
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1339390	0.93[ASN][1000 genomes]
rs1460184	0.91[ASN][1000 genomes]
rs66603876	0.98[ASN][1000 genomes]
rs73748878	0.84[AFR][1000 genomes]
rs73750905	0.98[ASN][1000 genomes]
rs989903	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531333	chr6:81042427-81836484	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv886315	chr6:81352515-81946866	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv886318	chr6:81447367-81769538	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2763957	chr6:81567637-81656379	Enhancers ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1032130	chr6:81572030-81722231	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2762604	chr6:81593275-81742093	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv428487	chr6:81607405-81742838	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv830709	chr6:81615127-81793247	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1033733	chr6:81641291-81728782	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81649000-81651600	Enhancers	Fetal Lung	lung
2	chr6:81649400-81650800	Enhancers	HSMMtube	muscle
3	chr6:81649600-81650600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr6:81649600-81650600	Weak transcription	NHLF	lung
5	chr6:81649600-81651400	Enhancers	Dnd41	blood
6	chr6:81649800-81651200	Enhancers	Rectal Smooth Muscle	rectum
7	chr6:81650000-81651200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:81650200-81650800	Enhancers	Colon Smooth Muscle	Colon
9	chr6:81650400-81651400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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