Variant report

Variant	rs10178003
Chromosome Location	chr2:179684466-179684467
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:179684034..179685580-chr2:179694109..179696895,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155657	Chromatin interaction
ENSG00000238542	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10497520	0.90[AMR][1000 genomes]
rs13417557	0.81[AFR][1000 genomes]
rs2029395	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2029397	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2046777	0.82[AFR][1000 genomes]
rs4893855	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834470	chr2:179555152-179728726	Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv934108	chr2:179556852-179729925	Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:179646000-179684800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr2:179659400-179698000	Weak transcription	Primary B cells from cord blood	blood
3	chr2:179666800-179684800	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr2:179674400-179691000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr2:179681400-179684800	Weak transcription	Primary T cells from cord blood	blood
6	chr2:179683200-179689000	Weak transcription	Left Ventricle	heart
7	chr2:179683600-179685000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr2:179683600-179685000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr2:179683600-179685000	Enhancers	HSMM	muscle
10	chr2:179683600-179685200	Enhancers	HSMMtube	muscle
11	chr2:179683600-179685800	Enhancers	Fetal Heart	heart
12	chr2:179683800-179685000	Enhancers	Muscle Satellite Cultured Cells	--
13	chr2:179683800-179685200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr2:179684000-179684800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr2:179684200-179684600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr2:179684200-179684600	Enhancers	NHDF-Ad	bronchial
17	chr2:179684200-179684800	Enhancers	HUVEC	blood vessel
18	chr2:179684200-179685000	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr2:179684200-179685000	Active TSS	Skeletal Muscle Male	skeletal muscle
20	chr2:179684200-179685000	Enhancers	NH-A	brain
21	chr2:179684200-179685000	Enhancers	NHLF	lung
22	chr2:179684200-179685000	Enhancers	Osteobl	bone
23	chr2:179684200-179685200	Enhancers	Ovary	ovary
24	chr2:179684200-179685200	Active TSS	Skeletal Muscle Female	skeletal muscle
25	chr2:179684200-179686000	Enhancers	Primary hematopoietic stem cells	blood
26	chr2:179684400-179684600	Enhancers	GM12878-XiMat	blood
27	chr2:179684400-179684800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
28	chr2:179684400-179684800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr2:179684400-179684800	Enhancers	Psoas Muscle	Psoas
30	chr2:179684400-179685000	Enhancers	Primary T helper naive cells from peripheral blood	blood
31	chr2:179684400-179685000	Active TSS	Right Atrium	heart

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