Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10178003	0.81[AFR][1000 genomes]
rs10184892	0.84[ASN][1000 genomes]
rs10189747	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10190488	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10210964	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10930835	0.92[ASN][1000 genomes]
rs10930836	0.92[ASN][1000 genomes]
rs11886281	0.93[ASN][1000 genomes]
rs11897189	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1489482	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1489484	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2029395	0.88[AFR][1000 genomes]
rs2029397	0.90[AFR][1000 genomes]
rs2046777	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2129108	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2170850	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4292125	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4893855	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59415652	0.93[ASN][1000 genomes]
rs7590740	0.93[ASN][1000 genomes]
rs998329	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834470	chr2:179555152-179728726	Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv934108	chr2:179556852-179729925	Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:179646000-179684800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr2:179659400-179698000	Weak transcription	Primary B cells from cord blood	blood
3	chr2:179666800-179684800	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr2:179673800-179683600	Weak transcription	HSMMtube	muscle
5	chr2:179674400-179691000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr2:179676400-179684400	Weak transcription	Psoas Muscle	Psoas
7	chr2:179681200-179683600	Weak transcription	Fetal Heart	heart
8	chr2:179681400-179683800	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr2:179681400-179684800	Weak transcription	Primary T cells from cord blood	blood
10	chr2:179682200-179684400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr2:179682600-179683200	Enhancers	Left Ventricle	heart
12	chr2:179682600-179684400	Weak transcription	GM12878-XiMat	blood

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