Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10184892	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10189747	0.96[ASN][1000 genomes]
rs10190488	0.88[ASN][1000 genomes]
rs10210964	0.85[ASN][1000 genomes]
rs10930836	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11885885	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11886281	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11897189	0.81[ASN][1000 genomes]
rs13417557	0.92[ASN][1000 genomes]
rs1489482	0.83[ASN][1000 genomes]
rs1489484	0.88[ASN][1000 genomes]
rs2046777	0.87[ASN][1000 genomes]
rs2129108	0.85[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2170850	0.85[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2279472	0.81[EUR][1000 genomes]
rs4292125	0.84[ASN][1000 genomes]
rs4893855	0.95[ASN][1000 genomes]
rs56988799	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59415652	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73040346	0.84[EUR][1000 genomes]
rs7590740	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs998329	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834470	chr2:179555152-179728726	Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv934108	chr2:179556852-179729925	Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:179646000-179684800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr2:179659400-179698000	Weak transcription	Primary B cells from cord blood	blood
3	chr2:179666800-179684800	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr2:179669600-179680800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr2:179672600-179676200	Weak transcription	Pancreas	Pancrea
6	chr2:179673000-179682600	Weak transcription	Left Ventricle	heart
7	chr2:179673800-179683600	Weak transcription	HSMMtube	muscle
8	chr2:179674000-179675200	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr2:179674000-179676000	Weak transcription	Psoas Muscle	Psoas
10	chr2:179674400-179675400	Weak transcription	Fetal Heart	heart
11	chr2:179674400-179691000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr2:179674600-179675000	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr2:179674600-179676800	Strong transcription	Primary T cells from cord blood	blood

Quick Search: