Variant report

Variant	rs7590740
Chromosome Location	chr2:179675319-179675320
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10165253	0.94[JPT][hapmap]
rs10184892	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10189747	0.97[ASN][1000 genomes]
rs10190488	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10199751	0.81[JPT][hapmap]
rs10210964	0.86[ASN][1000 genomes]
rs10930835	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10930836	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11885885	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11886281	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11897189	0.82[ASN][1000 genomes]
rs13417557	0.93[ASN][1000 genomes]
rs13420249	1.00[CEU][hapmap]
rs1489482	0.83[ASN][1000 genomes]
rs1489484	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2046777	0.88[ASN][1000 genomes]
rs2078403	0.81[JPT][hapmap]
rs2086832	0.94[JPT][hapmap]
rs2129108	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.97[ASN][1000 genomes]
rs2170850	1.00[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];0.81[YRI][hapmap];0.97[ASN][1000 genomes]
rs2220127	0.94[JPT][hapmap]
rs2279472	1.00[CEU][hapmap]
rs4292125	0.84[ASN][1000 genomes]
rs4893855	0.96[ASN][1000 genomes]
rs56988799	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59415652	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73040346	0.81[EUR][1000 genomes]
rs998329	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834470	chr2:179555152-179728726	Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv934108	chr2:179556852-179729925	Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:179646000-179684800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr2:179659400-179698000	Weak transcription	Primary B cells from cord blood	blood
3	chr2:179666800-179684800	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr2:179669600-179680800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr2:179672600-179676200	Weak transcription	Pancreas	Pancrea
6	chr2:179673000-179682600	Weak transcription	Left Ventricle	heart
7	chr2:179673800-179683600	Weak transcription	HSMMtube	muscle
8	chr2:179674000-179676000	Weak transcription	Psoas Muscle	Psoas
9	chr2:179674400-179675400	Weak transcription	Fetal Heart	heart
10	chr2:179674400-179691000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr2:179674600-179676800	Strong transcription	Primary T cells from cord blood	blood
12	chr2:179675000-179676000	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr2:179675200-179675400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle

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