Variant report

Variant	rs10189747
Chromosome Location	chr2:179683640-179683641
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10165253	0.94[JPT][hapmap]
rs10184892	0.90[CHB][hapmap];0.81[CHD][hapmap];0.87[ASN][1000 genomes]
rs10190488	0.82[ASW][hapmap];1.00[CEU][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10210964	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10930835	0.96[ASN][1000 genomes]
rs10930836	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11885885	0.82[ASN][1000 genomes]
rs11886281	0.97[ASN][1000 genomes]
rs11897189	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12615288	0.87[EUR][1000 genomes]
rs13417557	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1489482	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1489484	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2046777	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2078403	0.81[JPT][hapmap]
rs2086832	0.93[JPT][hapmap]
rs2129108	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2170850	0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2220127	0.86[GIH][hapmap];0.94[JPT][hapmap]
rs2279472	0.82[TSI][hapmap]
rs4292125	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4893855	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56988799	0.82[ASN][1000 genomes]
rs59415652	0.97[ASN][1000 genomes]
rs7590740	0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs998329	0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834470	chr2:179555152-179728726	Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv934108	chr2:179556852-179729925	Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:179646000-179684800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr2:179659400-179698000	Weak transcription	Primary B cells from cord blood	blood
3	chr2:179666800-179684800	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr2:179674400-179691000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr2:179676400-179684400	Weak transcription	Psoas Muscle	Psoas
6	chr2:179681400-179683800	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr2:179681400-179684800	Weak transcription	Primary T cells from cord blood	blood
8	chr2:179682200-179684400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr2:179682600-179684400	Weak transcription	GM12878-XiMat	blood
10	chr2:179683200-179689000	Weak transcription	Left Ventricle	heart
11	chr2:179683600-179683800	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr2:179683600-179685000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr2:179683600-179685000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr2:179683600-179685000	Enhancers	HSMM	muscle
15	chr2:179683600-179685200	Enhancers	HSMMtube	muscle
16	chr2:179683600-179685800	Enhancers	Fetal Heart	heart

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