Variant report

Variant	rs10178200
Chromosome Location	chr2:188899336-188899337
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10178035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10186464	0.87[AFR][1000 genomes]
rs10206202	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13382365	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13390521	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13392841	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13394490	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13395332	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13396017	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13396168	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13399474	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13409305	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13409842	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13410181	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13415844	0.97[AFR][1000 genomes]
rs13419775	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13424259	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13425223	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13428925	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28533081	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28796667	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59158272	0.87[AFR][1000 genomes]
rs6721351	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6726657	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6747109	0.87[AFR][1000 genomes]
rs7579505	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533353	chr2:188498301-189024655	Weak transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv875597	chr2:188573244-188916290	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv584041	chr2:188644642-188928433	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv523293	chr2:188774681-188928433	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv875601	chr2:188871436-188934777	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:188892600-188911400	Weak transcription	Aorta	Aorta
2	chr2:188896800-188901200	Active TSS	H9 Cell Line	embryonic stem cell
3	chr2:188897800-188899600	Active TSS	HUES6 Cell Line	embryonic stem cell
4	chr2:188897800-188900600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
5	chr2:188897800-188901200	Active TSS	iPS-15b Cell Line	embryonic stem cell
6	chr2:188897800-188901400	Active TSS	ES-I3 Cell Line	embryonic stem cell
7	chr2:188897800-188901400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr2:188897800-188901400	Active TSS	HUES64 Cell Line	embryonic stem cell
9	chr2:188898000-188900600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr2:188898000-188901200	Active TSS	HUES48 Cell Line	embryonic stem cell
11	chr2:188898200-188900200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr2:188898400-188900800	Active TSS	iPS-20b Cell Line	embryonic stem cell
13	chr2:188898400-188901200	Active TSS	H1 Cell Line	embryonic stem cell
14	chr2:188898600-188899600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
15	chr2:188898600-188901400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr2:188898800-188900600	Active TSS	iPS-18 Cell Line	embryonic stem cell
17	chr2:188899200-188899600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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