Variant report

Variant	rs6747109
Chromosome Location	chr2:188969402-188969403
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10168466	1.00[AMR][1000 genomes]
rs10178035	0.87[AFR][1000 genomes]
rs10178200	0.87[AFR][1000 genomes]
rs10186464	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10196886	1.00[AMR][1000 genomes]
rs10206202	0.85[AFR][1000 genomes]
rs13382365	0.85[AFR][1000 genomes]
rs13389097	1.00[AMR][1000 genomes]
rs13390521	0.85[AFR][1000 genomes]
rs13392841	1.00[AFR][1000 genomes]
rs13394490	0.85[AFR][1000 genomes]
rs13395248	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13395332	0.83[AFR][1000 genomes]
rs13396017	0.87[AFR][1000 genomes]
rs13396168	0.90[AFR][1000 genomes]
rs13399474	0.85[AFR][1000 genomes]
rs13400817	1.00[AMR][1000 genomes]
rs13407674	1.00[AMR][1000 genomes]
rs13409305	0.85[AFR][1000 genomes]
rs13409842	1.00[AFR][1000 genomes]
rs13410181	1.00[AFR][1000 genomes]
rs13415844	0.85[AFR][1000 genomes]
rs13419775	0.85[AFR][1000 genomes]
rs13423258	1.00[AMR][1000 genomes]
rs13424259	0.85[AFR][1000 genomes]
rs13424983	1.00[AMR][1000 genomes]
rs13425223	0.85[AFR][1000 genomes]
rs13428925	0.85[AFR][1000 genomes]
rs28533081	0.85[AFR][1000 genomes]
rs59158272	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6721351	0.85[AFR][1000 genomes]
rs6726657	0.85[AFR][1000 genomes]
rs6743691	1.00[AMR][1000 genomes]
rs7579505	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533353	chr2:188498301-189024655	Weak transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv875602	chr2:188923773-189016215	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv875603	chr2:188923773-189025977	Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv584044	chr2:188928433-189016215	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1002714	chr2:188934297-189025084	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv584045	chr2:188949715-189003106	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv875604	chr2:188957640-189043137	Enhancers Transcr. at gene 5' and 3' Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv584046	chr2:188967163-189006890	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:188944600-188988000	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr2:188968000-188969600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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