Variant report

Variant	rs10196886
Chromosome Location	chr2:189115728-189115729
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10153862	0.80[AFR][1000 genomes]
rs10168466	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10174521	0.80[AFR][1000 genomes]
rs10186464	1.00[AMR][1000 genomes]
rs10211482	0.80[AFR][1000 genomes]
rs13389097	1.00[AMR][1000 genomes]
rs13390367	0.80[AFR][1000 genomes]
rs13391898	1.00[AMR][1000 genomes]
rs13395248	1.00[AMR][1000 genomes]
rs13400817	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13407674	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13423258	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13424983	1.00[AMR][1000 genomes]
rs59158272	1.00[AMR][1000 genomes]
rs6710795	0.80[AFR][1000 genomes]
rs6743691	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6747109	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010394	chr2:188994398-189284092	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
2	nsv998395	chr2:189018246-189284092	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv431879	chr2:189079494-189118494	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv511165	chr2:189112811-189122229	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:189100400-189121200	Weak transcription	K562	blood
2	chr2:189110200-189115800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr2:189114200-189116000	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr2:189114800-189115800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr2:189115400-189116000	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr2:189115400-189116000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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