Variant report

Variant	rs13390367
Chromosome Location	chr2:189127877-189127878
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:189125887..189128792-chr2:189144511..189146898,3	K562	blood:
2	chr2:189127077..189128792-chr2:189145398..189147368,2	K562	blood:
3	chr2:189127278..189129661-chr2:189156370..189159113,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000144366	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10153666	1.00[AMR][1000 genomes]
rs10153862	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10168466	0.80[AFR][1000 genomes]
rs10171583	1.00[AMR][1000 genomes]
rs10174521	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10184797	1.00[AMR][1000 genomes]
rs10190630	1.00[AMR][1000 genomes]
rs10192679	1.00[AMR][1000 genomes]
rs10196886	0.80[AFR][1000 genomes]
rs10197598	1.00[AMR][1000 genomes]
rs10198965	1.00[AMR][1000 genomes]
rs10211425	1.00[AMR][1000 genomes]
rs10211482	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10439261	1.00[AMR][1000 genomes]
rs13386579	1.00[AMR][1000 genomes]
rs13391799	1.00[AMR][1000 genomes]
rs13392080	1.00[AMR][1000 genomes]
rs13399903	1.00[AMR][1000 genomes]
rs13400817	0.80[AFR][1000 genomes]
rs13401242	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13401321	1.00[AMR][1000 genomes]
rs13401975	1.00[AMR][1000 genomes]
rs13402240	1.00[AMR][1000 genomes]
rs13403672	1.00[AMR][1000 genomes]
rs13404901	1.00[AMR][1000 genomes]
rs13407674	0.80[AFR][1000 genomes]
rs13411351	1.00[AMR][1000 genomes]
rs13414813	1.00[AMR][1000 genomes]
rs13418323	1.00[AMR][1000 genomes]
rs13423258	0.80[AFR][1000 genomes]
rs13423468	1.00[AMR][1000 genomes]
rs13424443	1.00[AMR][1000 genomes]
rs28528331	1.00[AMR][1000 genomes]
rs59080597	1.00[AMR][1000 genomes]
rs6705869	1.00[AMR][1000 genomes]
rs6710795	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6742748	1.00[AMR][1000 genomes]
rs6743691	0.80[AFR][1000 genomes]
rs6748075	1.00[AMR][1000 genomes]
rs6755644	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6759147	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7589600	1.00[AMR][1000 genomes]
rs9288156	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010394	chr2:188994398-189284092	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
2	nsv998395	chr2:189018246-189284092	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	esv1811040	chr2:189119837-189150420	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:189121600-189128600	Weak transcription	Aorta	Aorta
2	chr2:189121800-189147800	Weak transcription	K562	blood

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