Variant report

Variant	rs1017829
Chromosome Location	chr8:114195858-114195859
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 162 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:157)

rs_ID	r²[population]
rs10087093	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10094069	1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.91[TSI][hapmap]
rs10094486	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10108312	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10111703	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1014321	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1021875	1.00[JPT][hapmap]
rs1021876	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap]
rs1021877	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap]
rs1021878	0.89[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap]
rs1034511	1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap]
rs1038192	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap]
rs10505199	0.89[CHD][hapmap];0.83[GIH][hapmap];0.93[MEX][hapmap];0.91[TSI][hapmap]
rs10955642	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10955646	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1156075	1.00[JPT][hapmap]
rs1156076	1.00[JPT][hapmap]
rs1159225	1.00[JPT][hapmap]
rs11778755	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.86[MKK][hapmap];0.95[TSI][hapmap]
rs11985196	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11990304	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11995656	0.89[CHD][hapmap];0.87[TSI][hapmap]
rs12541577	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12675949	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap]
rs13249480	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13270413	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.86[MKK][hapmap];0.95[TSI][hapmap]
rs1351387	1.00[JPT][hapmap]
rs1351388	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1351389	0.96[CEU][hapmap]
rs1351392	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1354445	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1354446	0.89[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1383293	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1383294	0.89[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap]
rs1383296	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1383298	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1383299	1.00[JPT][hapmap]
rs1383300	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1394268	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1394269	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1394270	0.89[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap]
rs1394271	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1402943	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1472723	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1472724	0.89[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap]
rs1478678	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.86[MKK][hapmap];0.95[TSI][hapmap]
rs1480443	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1480446	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1480448	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1480455	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1480462	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1480463	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1504337	0.87[ASN][1000 genomes]
rs1504338	1.00[JPT][hapmap]
rs1504339	1.00[JPT][hapmap]
rs1504340	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1504346	0.89[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.91[TSI][hapmap]
rs1504347	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1522057	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1522058	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1522064	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap]
rs1522065	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1532798	1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.91[TSI][hapmap]
rs1532799	1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.91[TSI][hapmap]
rs1566835	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1600574	1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.91[TSI][hapmap]
rs17602288	1.00[JPT][hapmap]
rs17602393	0.89[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[MKK][hapmap];0.98[TSI][hapmap]
rs17602529	1.00[JPT][hapmap]
rs17605667	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17607120	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1817453	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1827626	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1857717	1.00[JPT][hapmap]
rs1857718	0.89[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap]
rs1904217	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.87[ASN][1000 genomes]
rs1904218	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.86[MKK][hapmap];0.95[TSI][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1948845	1.00[JPT][hapmap]
rs1969112	1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.91[TSI][hapmap]
rs1969113	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2030506	0.89[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.93[MKK][hapmap];0.93[TSI][hapmap]
rs2030507	0.92[CEU][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap];0.86[MKK][hapmap];0.91[TSI][hapmap]
rs2127689	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2134838	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2134839	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2134842	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2356050	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs2356203	0.89[CEU][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];0.86[MKK][hapmap];0.93[TSI][hapmap]
rs2356204	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2883836	1.00[JPT][hapmap]
rs2883875	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3853260	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3853261	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3853262	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3912243	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4242551	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap]
rs4437684	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4509361	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4565484	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4876299	1.00[JPT][hapmap]
rs4876300	0.89[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap]
rs4876502	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs4876507	1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.91[TSI][hapmap]
rs58021089	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6469452	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6982602	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap]
rs6995484	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6997105	1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.91[TSI][hapmap]
rs6999773	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6999828	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7004426	1.00[JPT][hapmap]
rs7007093	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs7013894	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7014643	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7015519	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7015794	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7015938	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs750262	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7812581	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7812971	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7817385	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7817505	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7820383	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7821294	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7824290	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7824314	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7824563	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7824652	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7825515	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7828518	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7829709	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7829954	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7833634	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7834106	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7835368	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7836578	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap]
rs7840572	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7840935	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7843570	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs899831	0.89[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.93[MEX][hapmap];0.93[MKK][hapmap];0.98[TSI][hapmap]
rs9283946	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap]
rs9297481	1.00[JPT][hapmap]
rs9297482	1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.91[TSI][hapmap]
rs9297486	1.00[JPT][hapmap]
rs9297488	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9642818	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs964763	1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.91[TSI][hapmap]
rs964764	1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.91[TSI][hapmap]
rs9650051	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs971124	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs972149	1.00[JPT][hapmap]
rs974760	1.00[JPT][hapmap]
rs979895	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs979896	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs990220	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs990745	1.00[JPT][hapmap]
rs996252	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754581	chr8:114029421-114419106	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv831428	chr8:114102983-114320802	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv916637	chr8:114116303-114338450	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1035014	chr8:114180224-114261619	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1022803	chr8:114180224-114354093	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1017829	CSMD3	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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