Variant report

Variant	rs2356203
Chromosome Location	chr8:114239487-114239488
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 119 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:112)

rs_ID	r²[population]
rs10087093	0.82[YRI][hapmap]
rs10094486	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1014321	0.85[CEU][hapmap]
rs1017829	0.89[CEU][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];0.86[MKK][hapmap];0.93[TSI][hapmap]
rs1021878	0.87[ASW][hapmap];0.85[CEU][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];0.92[MKK][hapmap];0.93[TSI][hapmap]
rs1034511	1.00[CHD][hapmap];0.80[TSI][hapmap]
rs1038192	0.85[CEU][hapmap];0.92[MKK][hapmap];0.93[TSI][hapmap]
rs10955642	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10955646	0.84[CEU][hapmap]
rs11778755	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];0.84[LWK][hapmap];0.82[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];0.82[YRI][hapmap]
rs11985196	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11990304	0.81[CEU][hapmap]
rs12541577	0.89[CEU][hapmap]
rs12675949	0.87[ASW][hapmap];0.89[CEU][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];0.92[MKK][hapmap];0.93[TSI][hapmap]
rs13249480	0.96[CEU][hapmap];0.82[YRI][hapmap]
rs13270413	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];0.92[LWK][hapmap];0.82[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];0.82[YRI][hapmap]
rs1351388	0.89[CEU][hapmap];0.82[YRI][hapmap]
rs1351389	0.85[CEU][hapmap]
rs1351392	0.84[CEU][hapmap]
rs1354445	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1354446	0.87[ASW][hapmap];0.85[CEU][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];0.92[MKK][hapmap];0.93[TSI][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1383293	0.85[CEU][hapmap]
rs1383294	0.87[ASW][hapmap];0.85[CEU][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];0.92[MKK][hapmap];0.93[TSI][hapmap]
rs1383296	0.85[CEU][hapmap]
rs1383298	0.85[CEU][hapmap];0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1383300	0.85[CEU][hapmap];0.82[YRI][hapmap]
rs1394268	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1394269	0.85[CEU][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1394270	0.87[ASW][hapmap];0.85[CEU][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];0.81[MEX][hapmap];0.92[MKK][hapmap];0.93[TSI][hapmap]
rs1394271	0.85[CEU][hapmap]
rs1402943	1.00[CEU][hapmap];0.82[YRI][hapmap]
rs1472723	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1472724	0.87[ASW][hapmap];0.85[CEU][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];0.92[MKK][hapmap];0.93[TSI][hapmap]
rs1478678	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];0.92[LWK][hapmap];0.82[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];0.82[YRI][hapmap]
rs1480443	0.84[ASN][1000 genomes]
rs1480446	0.84[CEU][hapmap]
rs1480448	0.85[CEU][hapmap]
rs1480455	0.85[CEU][hapmap];0.82[YRI][hapmap]
rs1480462	0.89[CEU][hapmap]
rs1480463	0.85[CEU][hapmap]
rs1504337	0.81[ASN][1000 genomes]
rs1504340	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1522057	0.89[CEU][hapmap];0.82[YRI][hapmap]
rs1522058	1.00[CEU][hapmap];0.82[YRI][hapmap]
rs1522064	1.00[ASW][hapmap];0.88[CEU][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];0.81[LWK][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];0.82[YRI][hapmap]
rs1522065	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1600574	1.00[CHD][hapmap];0.84[TSI][hapmap]
rs17605667	0.88[CEU][hapmap]
rs17607120	1.00[CEU][hapmap];0.82[YRI][hapmap]
rs1817453	0.85[CEU][hapmap]
rs1827626	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1904217	1.00[ASW][hapmap];1.00[CHD][hapmap];0.84[LWK][hapmap];0.89[MKK][hapmap];0.80[TSI][hapmap];0.82[YRI][hapmap];0.87[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs1904218	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];0.84[LWK][hapmap];0.82[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];0.82[YRI][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2030506	0.87[ASW][hapmap];0.81[CEU][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];0.92[MKK][hapmap];0.88[TSI][hapmap]
rs2030507	1.00[ASW][hapmap];1.00[CEU][hapmap];0.89[CHD][hapmap];0.81[GIH][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];0.82[YRI][hapmap]
rs2127689	0.85[CEU][hapmap];0.82[YRI][hapmap]
rs2134839	0.85[CEU][hapmap];0.82[YRI][hapmap]
rs2356204	1.00[CEU][hapmap];0.82[YRI][hapmap]
rs2883875	0.89[CEU][hapmap]
rs3853260	0.89[CEU][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3853261	0.89[CEU][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3853262	0.89[CEU][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3912243	0.89[CEU][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4242551	1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];0.96[MKK][hapmap];0.93[TSI][hapmap];0.82[YRI][hapmap]
rs4437684	0.89[CEU][hapmap]
rs4509361	0.85[CEU][hapmap]
rs4565484	1.00[CEU][hapmap]
rs4876300	0.87[ASW][hapmap];0.85[CEU][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];0.92[MKK][hapmap];0.93[TSI][hapmap]
rs4876507	1.00[CHD][hapmap];0.84[TSI][hapmap]
rs58021089	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6469452	0.88[CEU][hapmap];0.82[YRI][hapmap]
rs6982602	1.00[ASW][hapmap];0.85[CEU][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];0.92[LWK][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];0.82[YRI][hapmap]
rs6995484	0.85[CEU][hapmap]
rs6997105	1.00[CHD][hapmap];0.84[TSI][hapmap]
rs6999773	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6999828	0.84[CEU][hapmap];0.82[YRI][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7007093	0.85[CEU][hapmap];1.00[CHD][hapmap];0.93[TSI][hapmap]
rs7013894	0.85[CEU][hapmap]
rs7014643	0.85[CEU][hapmap]
rs7015519	0.84[CEU][hapmap]
rs7015794	0.85[CEU][hapmap]
rs750262	1.00[CEU][hapmap];0.82[YRI][hapmap]
rs7812581	0.85[CEU][hapmap]
rs7812971	0.84[ASN][1000 genomes]
rs7817385	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7817505	0.85[CEU][hapmap];1.00[CHD][hapmap];0.89[MKK][hapmap];0.93[TSI][hapmap];0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7820383	0.84[CEU][hapmap];0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7821294	0.85[CEU][hapmap]
rs7824290	0.89[CEU][hapmap]
rs7824314	0.85[CEU][hapmap];0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7824563	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7824652	0.82[CEU][hapmap]
rs7825515	1.00[CEU][hapmap];0.82[YRI][hapmap]
rs7828518	0.89[CEU][hapmap]
rs7829709	0.85[CEU][hapmap];0.82[YRI][hapmap]
rs7829954	0.85[CEU][hapmap]
rs7833634	0.92[CEU][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7834106	0.89[CEU][hapmap];0.82[YRI][hapmap]
rs7835368	0.89[CEU][hapmap];0.82[YRI][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7836578	1.00[ASW][hapmap];0.85[CEU][hapmap];0.89[CHD][hapmap];0.80[GIH][hapmap];0.84[LWK][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];0.82[YRI][hapmap]
rs7840572	0.85[CEU][hapmap]
rs7840935	0.85[CEU][hapmap]
rs7843570	1.00[CEU][hapmap];0.82[YRI][hapmap]
rs899831	0.87[ASW][hapmap];0.85[CEU][hapmap];1.00[CHD][hapmap];0.92[MKK][hapmap];0.91[TSI][hapmap]
rs9283946	0.85[CEU][hapmap];1.00[CHD][hapmap];0.91[TSI][hapmap]
rs9297488	0.85[CEU][hapmap]
rs9642818	0.88[CEU][hapmap];0.82[YRI][hapmap]
rs9650051	0.95[CEU][hapmap];1.00[JPT][hapmap]
rs971124	0.85[CEU][hapmap];0.82[YRI][hapmap]
rs979895	0.85[CEU][hapmap]
rs979896	0.88[CEU][hapmap];1.00[CHB][hapmap]
rs990220	0.84[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754581	chr8:114029421-114419106	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv831428	chr8:114102983-114320802	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv916637	chr8:114116303-114338450	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1035014	chr8:114180224-114261619	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1022803	chr8:114180224-114354093	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1019367	chr8:114205501-114288454	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1034285	chr8:114227114-114278041	Active TSS Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2356203	CSMD3	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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