Variant report

Variant	rs10178958
Chromosome Location	chr2:58120539-58120540
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:58118375..58121623-chr2:58123563..58127574,4	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10167352	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1040226	1.00[CEU][hapmap];0.89[CHB][hapmap];0.88[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11125736	1.00[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.83[MKK][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11125739	0.89[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap]
rs11895197	1.00[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13382798	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13392894	0.96[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs17049201	0.85[EUR][1000 genomes]
rs2312140	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs41439747	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4144044	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58174848	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6545675	0.89[CEU][hapmap];0.94[JPT][hapmap]
rs6709037	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6711762	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72808425	0.96[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs7563883	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7596775	0.89[CEU][hapmap];0.83[CHB][hapmap];0.94[JPT][hapmap]
rs7609303	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs884669	1.00[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.83[MKK][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs962288	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007118	chr2:57562051-58147588	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv874196	chr2:57946148-58220320	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1010981	chr2:58013389-58205699	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv874199	chr2:58031249-58161520	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv834159	chr2:58101262-58283655	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:58117000-58122000	Enhancers	Fetal Brain Male	brain
2	chr2:58117400-58121200	Enhancers	Fetal Intestine Small	intestine
3	chr2:58118400-58120800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr2:58119400-58124800	Weak transcription	Fetal Intestine Large	intestine
5	chr2:58119800-58120800	Flanking Active TSS	GM12878-XiMat	blood
6	chr2:58119800-58121200	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr2:58120000-58122000	Enhancers	A549	lung
8	chr2:58120400-58120800	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr2:58120400-58121400	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr2:58120400-58121800	Enhancers	HepG2	liver

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